YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RCE1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFSTFLVL LYISISYVLP LYATSQPEGS KRDNPRTIKS RMQKLTIMLI SNLFLVPFLQ  60
   61 SQLSSTTSHI SFKDAFLGLG IIPGYYAALP NPWQFSQFVK DLTKCVAMLL TLYCGPVLDF 120
  121 VLYHLLNPKS SILEDFYHEF LNIWSFRNFI FAPITEEIFY TSMLLTTYLN LIPHSQLSYQ 180
  181 QLFWQPSLFF GLAHAHHAYE QLQEGSMTTV SILLTTCFQI LYTTLFGGLT KFVFVRTGGN 240
  241 LWCCIILHAL CNIMGFPGPS RLNLHFTVVD KKAGRISKLV SIWNKCYFAL LVLGLISLKD 300
  301 TLQTLVGTPG YRITL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.79
Transmembrane Helix	6	24	0.84
Cytoplasmic	25	44	0.88
Transmembrane Helix	45	63	0.91
Non-Cytoplasmic	64	69	0.80
Transmembrane Helix	70	89	0.81
Cytoplasmic	90	104	0.69
Transmembrane Helix	105	126	0.84
Non-Cytoplasmic	127	148	0.83
Transmembrane Helix	149	172	0.70
Cytoplasmic	173	180	0.68
Transmembrane Helix	181	198	0.77
Non-Cytoplasmic	199	206	0.61
Transmembrane Helix	207	229	0.82
Cytoplasmic	230	237	0.51
Transmembrane Helix	238	258	0.82
Non-Cytoplasmic	259	315	0.56