YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCS7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNTSKTLE LFSKKTVQEH NTANDCWVTY QNRKIYDVTR FLSEHPGGDE SILDYAGKDI  60
   61 TEIMKDSDVH EHSDSAYEIL EDEYLIGYLA TDEEAARLLT NKNHKVEVQL SADGTEFDST 120
  121 TFVKELPAEE KLSIATDYSN DYKKHKFLDL NRPLLMQILR SDFKKDFYVD QIHRPRHYGK 180
  181 GSAPLFGNFL EPLTKTAWWV VPVAWLPVVV YHMGVALKNM NQLFACFLFC VGVFVWTLIE 240
  241 YGLHRFLFHF DDWLPESNIA FATHFLLHGC HHYLPMDKYR LVMPPTLFVI LCAPFYKLVF 300
  301 ALLPLYWAYA GFAGGLFGYV CYDECHFFLH HSKLPPFMRK LKKYHLEHHY KNYQLGFGVT 360
  361 SWFWDEVFGT YLGPDAPLSK MKYE

Type	Start	End	Confidence
Non-Cytoplasmic	1	195	0.68
Transmembrane Helix	196	215	0.85
Cytoplasmic	216	222	0.66
Transmembrane Helix	223	244	0.89
Non-Cytoplasmic	245	256	0.62
Transmembrane Helix	257	274	0.61
Cytoplasmic	275	280	0.72
Transmembrane Helix	281	300	0.80
Non-Cytoplasmic	301	304	0.49
Transmembrane Helix	305	330	0.67
Cytoplasmic	331	384	0.71