YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMR253C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.91
Transmembrane Helix	69	88	0.79
Non-Cytoplasmic	89	108	0.81
Transmembrane Helix	109	127	0.90
Cytoplasmic	128	144	0.93
Transmembrane Helix	145	165	0.92
Non-Cytoplasmic	166	171	0.80
Transmembrane Helix	172	191	0.96
Cytoplasmic	192	199	0.90
Transmembrane Helix	200	219	0.95
Non-Cytoplasmic	220	241	0.90
Transmembrane Helix	242	262	0.95
Cytoplasmic	263	272	0.76
Transmembrane Helix	273	293	0.90
Non-Cytoplasmic	294	306	0.85
Transmembrane Helix	307	328	0.90
Cytoplasmic	329	335	0.86
Transmembrane Helix	336	354	0.91
Non-Cytoplasmic	355	360	0.83
Transmembrane Helix	361	380	0.94
Cytoplasmic	381	414	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSVPKVMK RENNTHLLVS KEMNDTSLQL PSTTRSLSPK ESNSNEDFNV DGNETTLQRI  60
   61 SKDYLKPNIG LVLLTVSYFF NSAMVVSTKV LENDPDDIAN DRQIKPLQIL LVRMVITYIG 120
  121 TLIYMYINKS TISDVPFGKP EVRKWLVLRG CTGFFGVFGM YYSLMYLTIS DAVLITFLAP 180
  181 SLTIFLSWVI LRERFTKVEA LGSLISLLGV VLIVRPSFLF GTPELTDSSS QIVESSDPKS 240
  241 RLIATLVGLW GVLGMSCVYI IIRYIGKRAH AIMSVSYFSL ITAIVSFIGI NTIPSMKFQI 300
  301 PHSKKQWILF GNLGVSGFIF QLLLTMGIQR ERAGRGSLMT YTQLLYAVFW DVALYKHWPN 360
  361 IWSWIGMIII ISATLWVIRI RAANNETTAK DLTPIIDDEE NSIPLTEFDL SDSK