YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCJ1
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIRCSTDKT WWIGQKSVHW LAKRSRTMIP KLYIHLILSL LLLPLILAQD YYAILEIDKD  60
   61 ATEKEIKSAY RQLSKKYHPD KNAGSEEAHQ KFIEVGEAYD VLSDPEKKKI YDQFGADAVK 120
  121 NGGGGGGPGG PGAGGFHDPF DIFERMFQGG HGGPGGGFGQ RQRQRGPMIK VQEKLSLKQF 180
  181 YSGSSIEFTL NLNDECDACH GSGSADGKLA QCPDCQGRGV IIQVLRMGIM TQQIQQMCGR 240
  241 CGGTGQIIKN ECKTCHGKKV TKKNKFFHVD VPPGAPRNYM DTRVGEAEKG PDFDAGDLVI 300
  301 EFKEKDTENM GYRRRGDNLY RTEVLSAAEA LYGGWQRTIE FLDENKPVKL SRPAHVVVSN 360
  361 GEVEVVKGFG MPKGSKGYGD LYIDYVVVMP KTFKSGQNML KDEL

Type	Start	End	Confidence
Signal Peptide	1	48	0.84
N-region	1	39
H-region	40	45
C-region	46	48
Cleavage Site	48	49
Non-Cytoplasmic	49	404	0.99