YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMR187C
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPPHFFLSL IKKRCICWIC LEESTYDSTW LQHTCGCNLQ IHKRCYIRWL YQMHVELFLP  60
   61 NTVDLPKDAD LPIITCLKCL VDGHHDFMTT FSLTEIWETR PIWGQKSVPF QNDYVFNLMS 120
  121 LYTKRDNHPP YVLVKFGECP QCKKTNFIKR PTVTIQSSVL SLFYQWQKIT RYVIPLGITS 180
  181 LFLLNPEKTS FDIGLWQLRC LFPENVLRNM LNISTTKALD VYAQTERGLL SIPLTSSIII 240
  241 YGFIHYLSNI SNVSANAILF KWVYLSIVKT AGNKYYKGIG LPKIILYSNL ATFCYNFTFK 300
  301 RLVDLIYRRL INKGGKYLYH GNFENSSNSV PAEEFFIRRN WYAILAEKIL WPFVGKCTGG 360
  361 LLLNAFLWIQ RKFKIEWTPN CSPSEFRMIF NIIGCGTAAI GWSSLKLYAS YKRCQELEKI 420
  421 NEFIEQSCKG E

Type	Start	End	Confidence
Non-Cytoplasmic	1	237	0.51
Transmembrane Helix	238	260	0.43
Cytoplasmic	261	348	0.50
Transmembrane Helix	349	369	0.72
Non-Cytoplasmic	370	387	0.73
Transmembrane Helix	388	409	0.71
Cytoplasmic	410	431	0.69