YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMR173W-A
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	29	0.86
Non-Cytoplasmic	30	34	0.56
Transmembrane Helix	35	55	0.75
Cytoplasmic	56	71	0.67
Transmembrane Helix	72	95	0.68
Non-Cytoplasmic	96	109	0.59
Transmembrane Helix	110	130	0.94
Cytoplasmic	131	145	0.58
Transmembrane Helix	146	168	0.82
Non-Cytoplasmic	169	182	0.56
Transmembrane Helix	183	204	0.71
Cytoplasmic	205	212	0.50
Transmembrane Helix	213	235	0.81
Non-Cytoplasmic	236	240	0.48
Transmembrane Helix	241	261	0.94
Cytoplasmic	262	299	0.41
Transmembrane Helix	300	321	0.75
Non-Cytoplasmic	322	341	0.64
Transmembrane Helix	342	361	0.76
Cytoplasmic	362	394	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTPTTTTH MVLITTIHMV LTTMIHMALT TMIHMAPTTM IHMALTTMIP TVLPTRRRAL  60
   61 MVLTMTIRTA PATTMTLTVP TTMTLTVPTT MTLTVPTMTT LTVRQTRIRA LTVPTMTILM 120
  121 ALTMMIHMVL PTRRRVLMVP ATTIRMVLTT MIHMVLTTMI HMALTTMIPT VLPTRRRALM 180
  181 VLTMTIRTAP ATTMTLTVPT MTTLTVRQTR IRALTVLLAT MILTDLPITT TLTVLPTRRR 240
  241 VLMVPTMTIL MALTMMIHMV LPTRRRVLMV PATTIRMVLT TMIPTVLLTK RRVLMVPTTM 300
  301 IHTAPATTMT LTVPTMTTLT VPLIETRTPM GLPTTVHPTM MTLMVHLIEA VVINTVVTTI 360
  361 TKFLDVFDKK NILLCLDLSM KILCMSCGYV SAGK