YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HLJ1
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.18
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTEDQEKI ALEILSKDKH EFYEILKVDR KATDSEIKKA YRKLAIKLHP DKNSHPKAGE  60
   61 AFKVINRAFE VLSNEEKRSI YDRIGRDPDD RQMPSRGAAS GFRGSAGGSP MGGGFEDMFF 120
  121 NSRFGGQRAG PPEDIFDFLF NAGGSPFGAS PFGPSASTFS FGGPGGFRVY TNNRGGSPFM 180
  181 RQQPRSRQQQ QQAEENAVNS QLKNMLVLFI IFIVLPMIKD YLFS

Type	Start	End	Confidence
Cytoplasmic	1	100	0.57
Transmembrane Helix	101	115	0.18
Non-Cytoplasmic	116	204	0.53
Transmembrane Helix	205	223	0.69
Cytoplasmic	224	224	0.37