YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VBA1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.62
Transmembrane Helix	103	121	0.94
Non-Cytoplasmic	122	128	0.70
Transmembrane Helix	129	150	0.88
Cytoplasmic	151	162	0.76
Transmembrane Helix	163	184	0.89
Non-Cytoplasmic	185	191	0.75
Transmembrane Helix	192	213	0.91
Cytoplasmic	214	232	0.91
Transmembrane Helix	233	252	0.96
Non-Cytoplasmic	253	258	0.85
Transmembrane Helix	259	280	0.92
Cytoplasmic	281	289	0.92
Transmembrane Helix	290	313	0.87
Non-Cytoplasmic	314	330	0.91
Transmembrane Helix	331	352	0.94
Cytoplasmic	353	361	0.90
Transmembrane Helix	362	385	0.90
Non-Cytoplasmic	386	412	0.94
Transmembrane Helix	413	438	0.89
Cytoplasmic	439	451	0.88
Transmembrane Helix	452	471	0.93
Non-Cytoplasmic	472	529	0.95
Transmembrane Helix	530	552	0.90
Cytoplasmic	553	562	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLDETSNL LPPPEEAEAP PLEQKFHEYN LALPKFPILF SLWLGSFLSS LDSTIVANIM  60
   61 NRVAEEFSES SKKQWIATSF LLTNTAFQPL YGKLSDITGR KSALLTAQFF FGLGCLLTCF 120
  121 ARNVTEFSIA RAICGIGAGG LNAISSIAVS DICTARERGV YQGYANIVFG FGQLLGAPLG 180
  181 GVFIETIGWR ALFGIQVPVI MLCSVLAIKN INIKLFHVPP MKERYTLKNL SRIDIFGSLS 240
  241 LVATISGVLF LCSSQLNKLY LALFTIGSFI VFILVERYYA TEKILPFELL TRSFCLSSAV 300
  301 TVISSFVVFG EIFRSPIYLQ LLQNISVTKT GLFLIFPSIS VAVGSLVTGW VLRNTKINLA 360
  361 HCAYQIIFGG MIMQLLGLGL GYFLLSHLNP DYTIYDMLES ITFRSNSIWW KLIYVFASVL 420
  421 VSFGYACLLV ATLVSIVFTV EKSQQGTMTG VFYLWRSIGN VLGASLTLVS YENSLSSMLW 480
  481 NYMFKTKRDD EYHFTKKQYY SLINDSSYLR GPNFPTDIFV RILDVYKKAF LISYIPNIAL 540
  541 AAVGIVLSLY LVKHTYKRSS SS