YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YMR010W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTGPLDAT LIRDVAVATA TKASYDMSDT LYSYLPKVDQ FYIPEWLTMQ FIANNLISFT  60
   61 PLFSYGTTII SIEKCKTALG FSIDICATML IASILRISYY LITPYEITLL RQSLVMIFIQ 120
  121 LILLRTSLKY RPDEYKYQNL TDVESLSHLI HDIWFEFFSC INRPKFLSED WKNLIKSLSF 180
  181 TNLLKFSFKI FLAFFYKILK FFDPNFKRIG AFWQWDDDKN FWRFLALFAT VQILVTFFIS 240
  241 NILNWDSLAQ GLGSIIGSLG LLVESLLPLP QIAILYKLKS VQGFKLILLV SWLCGDTLKI 300
  301 TYLIFGAKNI SALFVIFALF QMSLDFYIGG QYIYYRYYYP KLRHQHHPND SNSPSDEDES 360
  361 EMYELDLFNT LQKDVEKALK QDSNDTSDSP QDDQVGKSQA QAVTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.57
Transmembrane Helix	51	69	0.64
Cytoplasmic	70	77	0.79
Transmembrane Helix	78	100	0.87
Non-Cytoplasmic	101	106	0.76
Transmembrane Helix	107	128	0.77
Cytoplasmic	129	220	0.86
Transmembrane Helix	221	242	0.92
Non-Cytoplasmic	243	250	0.69
Transmembrane Helix	251	274	0.82
Cytoplasmic	275	283	0.77
Transmembrane Helix	284	305	0.81
Non-Cytoplasmic	306	311	0.70
Transmembrane Helix	312	335	0.83
Cytoplasmic	336	405	0.90