YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMA2
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFPKRLIVW GVLLILSLSQ FVLYLPATTC TNSKGLRLCA PQFTITVIGG SSTANEFIAS  60
   61 VREFLRLISY LTIDMGWSNE FTDPSVYEDE NLVDTFQPDK VFELNYFGFC KRSNKSKVYC 120
  121 TSNENYGMDV LEVLVRDVGI QLGNISTTRS NETKKFGDSL VLTYRLALTS IRDFLKHDKH 180
  181 TGNALSKALI GSPDPNVKGV SPTKNYLKGV NLAFILMMFN GMVFYFAVLE IIVGFLSICV 240
  241 VSAFGGALSV GKRHRLFPML LKSSSSILVV IATLTILCNI VYLIALKTLE PEEVTDVGSD 300
  301 NAAVHTTGWE LLKVNVGSGF IMGLARYAIQ WVLLVLAFLA ANHYKAKPKK SDKYTEDTSN 360
  361 SPSPDLMEK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.40
Transmembrane Helix	7	27	0.48
Non-Cytoplasmic	28	220	0.54
Transmembrane Helix	221	251	0.81
Cytoplasmic	252	264	0.86
Transmembrane Helix	265	286	0.92
Non-Cytoplasmic	287	323	0.92
Transmembrane Helix	324	344	0.85
Cytoplasmic	345	369	0.97