YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRM6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSLQKLKF QDIDINLIPT AKWTTKLQYI LYTWCQSILH VAMFFSDIYT CIKLLAFNTW  60
   61 SNNIIQPFLE FRISKWLFSG CILCSSLILI WELVIGLRVY RKKEITSNYM NGISRLINCL 120
  121 FNFKKYQIFE LIVLTDEKKF SKWLFFSYFE ISGCLRLLFG DSPRQIINGL TLWSVLLTVS 180
  181 NETSSGTHST QSLGNLDDLN GIINKIKHIA KTNYEESVIL SFMLFSFIIW VILISKLILS 240
  241 IIIFIIFIRP RFLSSKRKVK GYELKLRKYV SKVIDENLSR TVYELGILID DEEEGTICGD 300
  301 NKTQKKFDYD SPDYGDESTI PSYYCYSDVE TYERVYTPIK AYFPQKYKHK YI

Type	Start	End	Confidence
Cytoplasmic	1	29	0.90
Transmembrane Helix	30	52	0.77
Non-Cytoplasmic	53	75	0.78
Transmembrane Helix	76	95	0.95
Cytoplasmic	96	165	0.78
Transmembrane Helix	166	180	0.35
Non-Cytoplasmic	181	226	0.73
Transmembrane Helix	227	248	0.95
Cytoplasmic	249	352	0.80