YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YML018C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.91
Transmembrane Helix	13	37	0.87
Non-Cytoplasmic	38	46	0.85
Transmembrane Helix	47	70	0.78
Cytoplasmic	71	128	0.89
Transmembrane Helix	129	150	0.75
Non-Cytoplasmic	151	156	0.54
Transmembrane Helix	157	176	0.84
Cytoplasmic	177	183	0.73
Transmembrane Helix	184	202	0.81
Non-Cytoplasmic	203	222	0.88
Transmembrane Helix	223	244	0.90
Cytoplasmic	245	257	0.87
Transmembrane Helix	258	276	0.95
Non-Cytoplasmic	277	293	0.81
Transmembrane Helix	294	313	0.79
Cytoplasmic	314	319	0.65
Transmembrane Helix	320	341	0.86
Non-Cytoplasmic	342	346	0.69
Transmembrane Helix	347	366	0.92
Cytoplasmic	367	393	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKDQTSFN KRWTLGLLML GLVIILWVLS SFLINLIFED DSYRKPFFIT YTNTAAFIFY  60
   61 LFPTAKAVVV NYKDTGRANV HRELIMEEEG TGSDSNRSVD MTSPLLTNLE AGTHANQKKR 120
  121 LTLYETIKLS AEFCILWFTA NLVTNASLAF TSVASQTILS TTSSFFTLFI GAICHVESLS 180
  181 KSKVLGSFIS FVGIIMVTKS DSHQRYQRHI ADVSGDDNDA VQVLIGNLLA LAGAVLYGVY 240
  241 STLLKREVGD ETRVNMKIFF GFVGLFNLLF LWPSLIVLDF FGWEPFSLPK DPKVVVIIFV 300
  301 NCLITFVSDF CWAKAMLLTS PLTVTVGLSI TIPLAMFGDV IFKHKTMSAL YLFGATLILG 360
  361 SFFIINKSSE EEHFENSITA SNYESVEVPA ANN