YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VPS38
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRFLLSRRQ RHLRMICFHN ISLFRANGDS KLIKEYGDGF IPCFFILESI RGELLYVSEV  60
   61 QSGSLRKLSF QELPKLTGAS TMIVLKLVGL VPSDILCTIS SDKNGIIDDK WCVLCTYTID 120
  121 LNKLQPINED TVLITGTNAP VLDLIDGSYT LAAEKIKPLK GLVSSHKRNI SQVKIKFSLA 180
  181 YSSLLKLNKL LEYSSQVHEE INEISSKIED DFLSLKNQNH WYMRTVQKSI ETLEKEVLQR 240
  241 KKSKKNIEMA QLESNDTINH SKTELSLMSQ DESINDDYGS IYSRFVQIKD RLDQLRFKKL 300
  301 YQLIGIFHST DLFNSDRGYI YFEKPSSVND VINRLKLKPL NIEILLRQAG ESTKHREYVN 360
  361 SQLGYYLLFL HLTAIQIFKA PLPYRLMYYG STSVIDSQYP LYFTDQMISK HQAKLIKAIH 420
  421 YFNADILQFK QILENYRPT

Type	Start	End	Confidence
Signal Peptide	1	28	0.57
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	439	0.98