YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NEJ1
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSELKGQQL SDAEWCVKKI NGEGNCLLLF LPMSSPTTIV MIVLVSLERL VPYVFKLSQT  60
   61 QLSQQCQSQG FTDSISLNLI KLKLMDILQA PQEINQIGLV DSNLVFSFDV SADITVSINS 120
  121 VPSHVTKDMF YMILQSLCML LLKLVNLSTQ YHYVQRDILN EKQKCLDFLL ISLRDLDGGS 180
  181 KVISQWAPEN SKNYESLQQC TDDDIIKKLL HKGKFQHQEF LADSLKTLLS LRNKFQDVSR 240
  241 FEESGELNKK ERVRFPAVNH FYNDDFELQA DPTNEARPNS RGKIKPKTDF KPKSRESSTS 300
  301 SQLRLENFSE SEATPEKTKS SSSLVEEYPQ KKRKFGKVRI KN

Type	Start	End	Confidence
Cytoplasmic	1	25	0.54
Transmembrane Helix	26	45	0.52
Non-Cytoplasmic	46	342	0.93