YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRE1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.94
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	146	0.95
Transmembrane Helix	147	169	0.74
Cytoplasmic	170	213	0.72
Transmembrane Helix	214	236	0.76
Non-Cytoplasmic	237	252	0.59
Transmembrane Helix	253	274	0.78
Cytoplasmic	275	294	0.42
Transmembrane Helix	295	317	0.87
Non-Cytoplasmic	318	328	0.50
Transmembrane Helix	329	348	0.93
Cytoplasmic	349	358	0.46
Transmembrane Helix	359	379	0.64
Non-Cytoplasmic	380	382	0.49
Transmembrane Helix	383	401	0.78
Cytoplasmic	402	528	0.64
Transmembrane Helix	529	547	0.41
Non-Cytoplasmic	548	686	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRTRVLFCL FISFFATVQS SATLISTSCI SQAALYQFGC SSKSKSCYCK NINWLGSVTA  60
   61 CAYENSKSNK TLDSALMKLA SQCSSIKVYT LEDMKNIYLN ASNYLRAPEK SDKKTVVSQP 120
  121 LMANETAYHY YYEENYGIHL NLMRSQWCAW GLVFFWVAVL TAATILNILK RVFGKNIMAN 180
  181 SVKKSLIYPS VYKDYNERTF YLWKRLPFNF TTRGKGLVVL IFVILTILSL SFGHNIKLPH 240
  241 PYDRPRWRRS MAFVSRRADL MAIALFPVVY LFGIRNNPFI PITGLSFSTF NFYHKWSAYV 300
  301 CFMLAVVHSI VMTASGVKRG VFQSLVRKFY FRWGIVATIL MSIIIFQSEK VFRNRGYEIF 360
  361 LLIHKAMNIM FIIAMYYHCH TLGWMGWIWS MAGILCFDRF CRIVRIIMNG GLKTATLSTT 420
  421 DDSNVIKISV KKPKFFKYQV GAFAYMYFLS PKSAWFYSFQ SHPFTVLSER HRDPNNPDQL 480
  481 TMYVKANKGI TRVLLSKVLS APNHTVDCKI FLEGPYGVTV PHIAKLKRNL VGVAAGLGVA 540
  541 AIYPHFVECL RLPSTDQLQH KFYWIVNDLS HLKWFENELQ WLKEKSCEVS VIYTGSSVED 600
  601 TNSDESTKGF DDKEESEITV ECLNKRPDLK ELVRSEIKLS ELENNNITFY SCGPATFNDD 660
  661 FRNAVVQGID SSLKIDVELE EESFTW