YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MDL1
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVRMIRLCK GPKLLRSQFA SASALYSTKS LFKPPMYQKA EINLIIPHRK HFLLRSIRLQ  60
   61 SDIAQGKKST KPTLKLSNAN SKSSGFKDIK RLFVLSKPES KYIGLALLLI LISSSVSMAV 120
  121 PSVIGKLLDL ASESDGEDEE GSKSNKLYGF TKKQFFTALG AVFIIGAVAN ASRIIILKVT 180
  181 GERLVARLRT RTMKAALDQD ATFLDTNRVG DLISRLSSDA SIVAKSVTQN VSDGTRAIIQ 240
  241 GFVGFGMMSF LSWKLTCVMM ILAPPLGAMA LIYGRKIRNL SRQLQTSVGG LTKVAEEQLN 300
  301 ATRTIQAYGG EKNEVRRYAK EVRNVFHIGL KEAVTSGLFF GSTGLVGNTA MLSLLLVGTS 360
  361 MIQSGSMTVG ELSSFMMYAV YTGSSLFGLS SFYSELMKGA GAAARVFELN DRKPLIRPTI 420
  421 GKDPVSLAQK PIVFKNVSFT YPTRPKHQIF KDLNITIKPG EHVCAVGPSG SGKSTIASLL 480
  481 LRYYDVNSGS IEFGDEDIRN FNLRKYRRLI GYVQQEPLLF NGTILDNILY CIPPEIAEQD 540
  541 DRIRRAIGKA NCTKFLANFP DGLQTMVGAR GAQLSGGQKQ RIALARAFLL DPAVLILDEA 600
  601 TSALDSQSEE IVAKNLQRRV ERGFTTISIA HRLSTIKHST RVIVLGKHGS VVETGSFRDL 660
  661 IAIPNSELNA LLAEQQDEEG KGGVIDLDNS VAREV

Type	Start	End	Confidence
Cytoplasmic	1	101	0.86
Transmembrane Helix	102	124	0.85
Non-Cytoplasmic	125	154	0.79
Transmembrane Helix	155	177	0.87
Cytoplasmic	178	236	0.71
Transmembrane Helix	237	253	0.45
Non-Cytoplasmic	254	254	0.26
Transmembrane Helix	255	274	0.83
Cytoplasmic	275	335	0.61
Transmembrane Helix	336	358	0.82
Non-Cytoplasmic	359	373	0.57
Transmembrane Helix	374	394	0.72
Cytoplasmic	395	695	0.59