YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190406159
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDLIARDDS VDTCQASNGY NGHAGLRILA VFIILISSGL GVYFPILSSR YSFIRLPNWC  60
   61 FFIAKFFGSG VIVATAFVHL LQPAAEALGD ECLGGTFAEY PWAFGICLMS LFLLFFTEII 120
  121 THYFVAKTLG HDHGDHGEVT SIDVDAPSSG FVIRNMDSDP VSFNNEAAYS IHNDKTPYTT 180
  181 RNEEIVATPI KEKEPGSNVT NYDLEPGKTE SLANELVPTS SHATNLASVP GKDHYSHEND 240
  241 HQDVSQLATR IEEEDKEQYL NQILAVFILE FGIIFHSVFV GLSLSVAGEE FETLFIVLTF 300
  301 HQMFEGLGLG TRVAETNWPE SKKYMPWLMG LAFTLTSPIA VAVGIGVRHS WIPGSRRALI 360
  361 ANGVFDSISS GILIYTGLVE LMAHEFLYSN QFKGPDGLKK MLSAYLIMCC GAALMALLGK 420
  421 WA

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.96
Transmembrane Helix	26	47	0.93
Cytoplasmic	48	58	0.88
Transmembrane Helix	59	81	0.90
Non-Cytoplasmic	82	101	0.89
Transmembrane Helix	102	121	0.93
Cytoplasmic	122	262	0.97
Transmembrane Helix	263	286	0.81
Non-Cytoplasmic	287	326	0.75
Transmembrane Helix	327	347	0.93
Cytoplasmic	348	358	0.60
Transmembrane Helix	359	379	0.85
Non-Cytoplasmic	380	400	0.65
Transmembrane Helix	401	421	0.90
Cytoplasmic	422	422	0.75