YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAA1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLEKLHRR IVDMGLVPRI IALLPVISML CALFGFISIA ILPMDGQYRR TYISENALMP  60
   61 SQAYSYFRES EWNILRGYRS QIKEMVNMTS MERNNLMGSW LQEFGTKTAI YENEQYGETL 120
  121 YGVMHAPRGD GTEAMVLAVP WFNSDDEFNI GGAALGVSLA RFFSRWPVWS KNIIVVFSEN 180
  181 PRAALRSWVE AYHTSLDLTG GSIEAAVVLD YSSTEDFFEY VEISYDGLNG ELPNLDLVNI 240
  241 AISITEHEGM KVSLHGLPSD QLTNNNFWSR LKILCLGIRD WALSGVKKPH GNEAFSGWRI 300
  301 QSVTLKAHGN SGHDITTFGR IPEAMFRSIN NLLEKFHQSF FFYLLLAPRQ FVSISSYLPS 360
  361 AVALSIAFAI SSLNAFINNA YANISLFSEY NLVALLVWFV SLVISFVVSQ AFLLIPSSGL 420
  421 LMTISMASCF LPLILSRKIH ISEPLSYRLK NVAFLYFSLV STSLLMINFA MALLIGTLAF 480
  481 PMTFVKTIVE SSSEHEVTTQ SSNPIKTEPK DEIELVENHM DTTPATPQQQ KQKLKNLVLL 540
  541 ILTNPFISIT LFGLFFDDEF HGFDIINKLV SAWLDLKCWS WFVLCIGWLP CWLLILASSF 600
  601 ESKSVVVRSK EKQS

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	42	0.94
Non-Cytoplasmic	43	356	0.76
Transmembrane Helix	357	377	0.89
Cytoplasmic	378	389	0.53
Transmembrane Helix	390	414	0.82
Non-Cytoplasmic	415	418	0.36
Transmembrane Helix	419	436	0.82
Cytoplasmic	437	451	0.50
Transmembrane Helix	452	467	0.80
Non-Cytoplasmic	468	468	0.06
Transmembrane Helix	469	484	0.63
Cytoplasmic	485	536	0.48
Transmembrane Helix	537	556	0.83
Non-Cytoplasmic	557	577	0.60
Transmembrane Helix	578	600	0.88
Cytoplasmic	601	614	0.61