YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EMP70
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.91
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	304	0.99
Transmembrane Helix	305	327	0.90
Cytoplasmic	328	370	0.95
Transmembrane Helix	371	392	0.94
Non-Cytoplasmic	393	402	0.77
Transmembrane Helix	403	426	0.85
Cytoplasmic	427	437	0.82
Transmembrane Helix	438	461	0.89
Non-Cytoplasmic	462	470	0.75
Transmembrane Helix	471	492	0.88
Cytoplasmic	493	520	0.92
Transmembrane Helix	521	547	0.80
Non-Cytoplasmic	548	559	0.81
Transmembrane Helix	560	583	0.89
Cytoplasmic	584	594	0.83
Transmembrane Helix	595	616	0.92
Non-Cytoplasmic	617	632	0.81
Transmembrane Helix	633	656	0.88
Cytoplasmic	657	667	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYKMAHVQL LLLYFFVSTV KAFYLPGVAP TTYRENDNIP LLVNHLTPSM NYQHKDEDGN  60
   61 NVSGDKENFL YSYDYYYNRF HFCQPEKVEK QPESLGSVIF GDRIYNSPFQ LNMLQEKECE 120
  121 SLCKTVIPGD DAKFINKLIK NGFFQNWLID GLPAAREVYD GRTKTSFYGA GFNLGFVQVT 180
  181 QGTDIEATPK GAETTDKDVE LETRNDRNMV KTYELPYFAN HFDIMIEYHD RGEGNYRVVG 240
  241 VIVEPVSIKR SSPGTCETTG SPLMLDEGND NEVYFTYSVK FNESATSWAT RWDKYLHVYD 300
  301 PSIQWFSLIN FSLVVVLLSS VVIHSLLRAL KSDFARYNEL NLDDDFQEDS GWKLNHGDVF 360
  361 RSPSQSLTLS ILVGSGVQLF LMVTCSIFFA ALGFLSPSSR GSLATVMFIL YALFGFVGSY 420
  421 TSMGIYKFFN GPYWKANLIL TPLLVPGAIL LIIIALNFFL MFVHSSGVIP ASTLFFMVFL 480
  481 WFLFSIPLSF AGSLIARKRC HWDEHPTKTN QIARQIPFQP WYLKTIPATL IAGIFPFGSI 540
  541 AVELYFIYTS LWFNKIFYMF GFLFFSFLLL TLTSSLVTIL ITYHSLCLEN WKWQWRGFII 600
  601 GGAGCALYVF IHSILFTKFK LGGFTTIVLY VGYSSVISLL CCLVTGSIGF ISSMLFVRKI 660
  661 YSSIKVD