YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THI73
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	79	0.97
Transmembrane Helix	80	100	0.88
Non-Cytoplasmic	101	119	0.87
Transmembrane Helix	120	139	0.90
Cytoplasmic	140	146	0.85
Transmembrane Helix	147	170	0.85
Non-Cytoplasmic	171	176	0.75
Transmembrane Helix	177	197	0.94
Cytoplasmic	198	207	0.83
Transmembrane Helix	208	230	0.91
Non-Cytoplasmic	231	237	0.81
Transmembrane Helix	238	260	0.93
Cytoplasmic	261	311	0.94
Transmembrane Helix	312	333	0.88
Non-Cytoplasmic	334	344	0.76
Transmembrane Helix	345	366	0.89
Cytoplasmic	367	373	0.76
Transmembrane Helix	374	395	0.91
Non-Cytoplasmic	396	401	0.82
Transmembrane Helix	402	421	0.93
Cytoplasmic	422	432	0.82
Transmembrane Helix	433	454	0.85
Non-Cytoplasmic	455	464	0.72
Transmembrane Helix	465	486	0.82
Cytoplasmic	487	523	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNMSQRSMD VEKKAANADS CSVSTSSINV DDADVALRFL KQNGLDESST ANEDDVVAGE  60
   61 EANFYGSHEL SPKVLRKVDL FILPFLCCTY LLMFLDKALL NYAASMGIKD HLKGNEFSNL 120
  121 GTIFSAAYIF MEPVVTYLIQ KFPISKILGT FITVWGIVLA CHAACKTYAS LMVVRTLLGL 180
  181 FESSSAVGCI AISGMYYTKS EQSARIGFWA TQAGTGYIVG GLISFGFLHY HGTAFTSWQI 240
  241 MFLVVGLVTV AFGVLTFLYL PDNVTNAWFL NKEEKIQVVE HIRANQTGLE TKKFKKQQVK 300
  301 ELFLHDKFTW PMLLLTACSQ ISTGAIGTFS VTITGTFGFD KYETALLQLP IGAITAMIIL 360
  361 ITTQMLSRWG HITLITTSMY IPAIIGCIVL ISLPLSHKIG NLFSLYLLYS GSCVITNIYI 420
  421 WNSCNTSGYT KRVFRNAITM IVYNVSCIIA PQMFRAYSAP RYIPAKIALL VTQCVCVPLQ 480
  481 LYIGYICKKE NEKRDKEQEG QERKKYQFLD LTDIENRNFR YIY