YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MMP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.99
Transmembrane Helix	77	96	0.93
Non-Cytoplasmic	97	103	0.72
Transmembrane Helix	104	125	0.90
Cytoplasmic	126	143	0.85
Transmembrane Helix	144	165	0.86
Non-Cytoplasmic	166	185	0.85
Transmembrane Helix	186	204	0.96
Cytoplasmic	205	215	0.78
Transmembrane Helix	216	236	0.94
Non-Cytoplasmic	237	262	0.85
Transmembrane Helix	263	282	0.84
Cytoplasmic	283	299	0.84
Transmembrane Helix	300	321	0.92
Non-Cytoplasmic	322	355	0.92
Transmembrane Helix	356	378	0.85
Cytoplasmic	379	400	0.91
Transmembrane Helix	401	421	0.93
Non-Cytoplasmic	422	428	0.84
Transmembrane Helix	429	452	0.92
Cytoplasmic	453	472	0.88
Transmembrane Helix	473	492	0.95
Non-Cytoplasmic	493	508	0.77
Transmembrane Helix	509	530	0.89
Cytoplasmic	531	583	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEFESTKLS KVQFSTSVLS TPSNEGNNLI HRFKNSFKRN DSPAIQEGLL YSELSEEEKI  60
   61 QWDLANQPYK KVLDQRHLTM IAIGGTLGTG LFIGLGESLA SGPASLLIGF LLVGASMLCV 120
  121 VQCGAELSCQ YPVSGSYALH ASRFIDPSVG FSIGINYLLM WLISYPSELV GCSLTISYWA 180
  181 PSVNPAAWVA IAFVLSMLLN LFGARGFAES EFYMSIFKIV ALFIFIIIGI VLIAGGGPDS 240
  241 TGYIGTKYWH DPGSFAVPVF KNLCNTFVSA AYSFSGTEMV VLTSTEARSV SSVSRAAKGT 300
  301 FWRIIIFYIV TVIIIGCLVP YNDPRLISGS SSEDITASPF VIALSNTGAM GTRVSHFMNA 360
  361 VILIAVFSVC NSCVYASSRL IQGLATAGQL PKICAYMDRN GRPLVGMAIC GAFGLLGFLV 420
  421 VSKNQGTVFT WLFALCSISF FTTWFCICFC QVRFRMAMKA QGRSKDDIIY RSTLGIYGGI 480
  481 FGCILNVLLV IGEIYVSAAP VGSPSSAANF FEYCMSIPIM IAVYIGHRIY RRDWRHWYIK 540
  541 RMDIDLDSGH SLEDFEATKL ERDEDKKYVS SKPLYYRIYR FFC