YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.75
Transmembrane Helix	82	97	0.51
Non-Cytoplasmic	98	128	0.69
Transmembrane Helix	129	148	0.70
Cytoplasmic	149	157	0.71
Transmembrane Helix	158	177	0.93
Non-Cytoplasmic	178	186	0.76
Transmembrane Helix	187	209	0.90
Cytoplasmic	210	237	0.86
Transmembrane Helix	238	260	0.78
Non-Cytoplasmic	261	269	0.84
Transmembrane Helix	270	291	0.94
Cytoplasmic	292	353	0.97
Transmembrane Helix	354	376	0.82
Non-Cytoplasmic	377	388	0.83
Transmembrane Helix	389	409	0.89
Cytoplasmic	410	423	0.83
Transmembrane Helix	424	445	0.90
Non-Cytoplasmic	446	469	0.89
Transmembrane Helix	470	492	0.86
Cytoplasmic	493	501	0.91
Transmembrane Helix	502	524	0.91
Non-Cytoplasmic	525	530	0.84
Transmembrane Helix	531	552	0.95
Cytoplasmic	553	601	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNHPSQGSD DAQDEKQGDF PVIEEEKTQA VTLKDSYVSD DVANSTERYN LSPSPEDEDF  60
   61 EGPTEEEMQT LRHVGGKIPM RCWLIAIVEL SERFSYYGLS APFQNYMEYG PNDSPKGVLS 120
  121 LNSQGATGLS YFFQFWCYVT PVFGGYVADT FWGKYNTICC GTAIYIAGIF ILFITSIPSV 180
  181 GNRDSAIGGF IAAIILIGIA TGMIKANLSV LIADQLPKRK PSIKVLKSGE RVIVDSNITL 240
  241 QNVFMFFYFM INVGSLSLMA TTELEYHKGF WAAYLLPFCF FWIAVVTLIF GKKQYIQRPI 300
  301 GDKVIAKSFK VCWILTKNKF DFNAAKPSVH PEKNYPWNDK FVDEIKRALA ACKVFIFYPI 360
  361 YWTQYGTMIS SFITQASMME LHGIPNDFLQ AFDSIALIIF IPIFEKFVYP FIRRYTPLKP 420
  421 ITKIFFGFMF GSFAMTWAAV LQSFVYKAGP WYNEPLGHNT PNHVHVCWQI PAYVLISFSE 480
  481 IFASITGLEY AYSKAPASMK SFIMSIFLLT NAFGSAIGCA LSPVTVDPKF TWLFTGLAVA 540
  541 CFISGCLFWL CFRKYNDTEE EMNAMDYEEE DEFDLNPISA PKANDIEILE PMESLRSTTK 600
  601 Y