YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKR005C
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDLDNCKCL QCALSSLNNS CFHDYCTSKD EYDKLQIVVE QFQLTNGVLD DGEILKPRGN  60
   61 KFSSRKLSYF VGQNNTLFRN PLQFEKNQLI SALLTSLTNN QKTISSVDMF EVVDANNEVQ 120
  121 YLRERTISGK TLSPATGYEE ENDGDCSVKD KKWEGKIEYH ENKKVSSENC SKDTDDKSGS 180
  181 KKERNTKAPL FHTATEIHMT RWSSWRPKKI FTRYLVNEYQ SPKIITTVNR FYRTKTDTET 240
  241 GTTLITSTKA KRRWFPRTKI VTSTATSTFL SITTTTTTNA IATKSLVAVL NPDGLNKKAG 300
  301 INFGLFSANG ELASPDEGGT PTVVRRDKIS DPGAANEQAT LFSTTFSQVP HLPELDSGEF 360
  361 ISAASQLDKR IFIFTAITVS ITTLMMLGFS YRSRVSFRDH SIDDSDDDND WSDDEVEFDE 420
  421 EYFYSLPVSI PEKGISLDKM AQQLGVE

Type	Start	End	Confidence
Non-Cytoplasmic	1	370	0.80
Transmembrane Helix	371	391	0.90
Cytoplasmic	392	447	0.79