YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCH2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.96
Transmembrane Helix	40	60	0.87
Non-Cytoplasmic	61	82	0.85
Transmembrane Helix	83	105	0.91
Cytoplasmic	106	111	0.79
Transmembrane Helix	112	134	0.89
Non-Cytoplasmic	135	141	0.72
Transmembrane Helix	142	164	0.90
Cytoplasmic	165	170	0.87
Transmembrane Helix	171	194	0.87
Non-Cytoplasmic	195	201	0.86
Transmembrane Helix	202	223	0.95
Cytoplasmic	224	243	0.92
Transmembrane Helix	244	268	0.88
Non-Cytoplasmic	269	284	0.85
Transmembrane Helix	285	304	0.88
Cytoplasmic	305	310	0.86
Transmembrane Helix	311	332	0.93
Non-Cytoplasmic	333	339	0.81
Transmembrane Helix	340	362	0.88
Cytoplasmic	363	374	0.70
Transmembrane Helix	375	394	0.94
Non-Cytoplasmic	395	408	0.82
Transmembrane Helix	409	430	0.88
Cytoplasmic	431	473	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEERHEDHH RDVENKLNLN GKDDINGNTS ISIEVPDGGY GWFILLAFIL YNFSTWGANS  60
   61 GYAIYLAHYL ENNTFAGGSK LDYASIGGLA FSCGLFFAPV ITWLYHIFSI QFIIGLGILF 120
  121 QGAALLLAAF SVTLWEIYLT QGVLIGFGLA FIFIPSVTLI PLWFRNKRSL ASGIGTAGSG 180
  181 LGGIVFNLGM QSILQKRGVK WALIAQCIIC TSLSTIALML TRTTHQGLRQ HKRSYKFELL 240
  241 DYDVLSNFAV WLLFGFVSFA MLGYVVLLYS LSDFTVSLGY TSKQGSYVSC MVSVGSLLGR 300
  301 PIVGHIADKY GSLTVGMILH LVMAILCWAM WIPCKNLATA IRFGLLVGSI MGTIWPTIAS 360
  361 IVTRIVGLQK LPGTFGSTWI FMAAFALVAP IIGLELRSTD TNGNDYYRTA IFVGFAYFGV 420
  421 SLCQWLLRGF IIARDEIAVR EAYSADQNEL HLNVKLSHMS KCLFRYKQLP RRV