YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COS9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIVRSCNSN NKPLIPSSNW HIAIRMRGDG VKDRSIDVLS LKHFESQKVV LPQDLFMDNF  60
   61 TWMFYEFFKC FTFRTWLLLL LLMWLPGFLS QIKSINRIFP FKLCILVSCL VGIFLPNIYS 120
  121 FSHKSVLTNQ LTQFSKEIVE HAPGTDTHDW ETVAANLNSY FYENKAWNTE YFFFNAAECQ 180
  181 KAFRKVLLEP FSVKKDESSK IKSFGDSVPY IEEALQVYST EFDKKWKLFN TEKVWSPDNL 240
  241 EHVQLPKKTY RYKFTWVLKR IFNLWLFPAF ILFLACIYVS WDKGHLFRIL CCGGGFLLMV 300
  301 RVFQNMRPFS MHMEDKMQFL STIINEQESG ANGWDEIAKK MNRYLFEKKV WTSEEFFFDG 360
  361 IDCEWFFNHF FYRLLSTKKP MFDRPLNVEL WPYIKEAQLT RKQAPPV

Type	Start	End	Confidence
Cytoplasmic	1	69	0.98
Transmembrane Helix	70	90	0.90
Non-Cytoplasmic	91	97	0.84
Transmembrane Helix	98	119	0.92
Cytoplasmic	120	260	0.98
Transmembrane Helix	261	279	0.96
Non-Cytoplasmic	280	284	0.80
Transmembrane Helix	285	303	0.96
Cytoplasmic	304	407	0.98