YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	JEN1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.99
Transmembrane Helix	142	164	0.90
Non-Cytoplasmic	165	176	0.87
Transmembrane Helix	177	198	0.94
Cytoplasmic	199	205	0.90
Transmembrane Helix	206	225	0.93
Non-Cytoplasmic	226	231	0.81
Transmembrane Helix	232	254	0.89
Cytoplasmic	255	263	0.90
Transmembrane Helix	264	287	0.89
Non-Cytoplasmic	288	296	0.85
Transmembrane Helix	297	316	0.96
Cytoplasmic	317	363	0.97
Transmembrane Helix	364	383	0.95
Non-Cytoplasmic	384	402	0.92
Transmembrane Helix	403	423	0.94
Cytoplasmic	424	432	0.76
Transmembrane Helix	433	451	0.94
Non-Cytoplasmic	452	457	0.80
Transmembrane Helix	458	480	0.90
Cytoplasmic	481	490	0.81
Transmembrane Helix	491	510	0.50
Non-Cytoplasmic	511	535	0.52
Transmembrane Helix	536	556	0.89
Cytoplasmic	557	616	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSITDEKI SGEQQQPAGR KLYYNTSTFA EPPLVDGEGN PINYEPEVYN PDHEKLYHNP  60
   61 SLPAQSIQDT RDDELLERVY SQDQGVEYEE DEEDKPNLSA ASIKSYALTR FTSLLHIHEF 120
  121 SWENVNPIPE LRKMTWQNWN YFFMGYFAWL SAAWAFFCVS VSVAPLAELY DRPTKDITWG 180
  181 LGLVLFVRSA GAVIFGLWTD KSSRKWPYIT CLFLFVIAQL CTPWCDTYEK FLGVRWITGI 240
  241 AMGGIYGCAS ATAIEDAPVK ARSFLSGLFF SAYAMGFIFA IIFYRAFGYF RDDGWKILFW 300
  301 FSIFLPILLI FWRLLWPETK YFTKVLKARK LILSDAVKAN GGEPLPKANF KQKMVSMKRT 360
  361 VQKYWLLFAY LVVLLVGPNY LTHASQDLLP TMLRAQLGLS KDAVTVIVVV TNIGAICGGM 420
  421 IFGQFMEVTG RRLGLLIACT MGGCFTYPAF MLRSEKAILG AGFMLYFCVF GVWGILPIHL 480
  481 AELAPADARA LVAGLSYQLG NLASAAASTI ETQLADRYPL ERDASGAVIK EDYAKVMAIL 540
  541 TGSVFIFTFA CVFVGHEKFH RDLSSPVMKK YINQVEEYEA DGLSISDIVE QKTECASVKM 600
  601 IDSNVSKTYE EHIETV