YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPO5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.98
Transmembrane Helix	61	84	0.90
Non-Cytoplasmic	85	90	0.75
Transmembrane Helix	91	113	0.88
Cytoplasmic	114	137	0.88
Transmembrane Helix	138	160	0.82
Non-Cytoplasmic	161	178	0.78
Transmembrane Helix	179	200	0.93
Cytoplasmic	201	211	0.82
Transmembrane Helix	212	232	0.94
Non-Cytoplasmic	233	254	0.83
Transmembrane Helix	255	276	0.80
Cytoplasmic	277	296	0.86
Transmembrane Helix	297	317	0.94
Non-Cytoplasmic	318	343	0.94
Transmembrane Helix	344	367	0.87
Cytoplasmic	368	401	0.96
Transmembrane Helix	402	422	0.91
Non-Cytoplasmic	423	426	0.77
Transmembrane Helix	427	449	0.92
Cytoplasmic	450	465	0.93
Transmembrane Helix	466	488	0.90
Non-Cytoplasmic	489	496	0.82
Transmembrane Helix	497	518	0.90
Cytoplasmic	519	618	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEYTLLADN IRENIVHFDP NGLFDNLHTI VHEDDSQENE EAEHFNYDQV LDKSLLSRGS  60
   61 IVGLGLGLMS PVLGMCTSMA IGLINGGPLT IMLGFLISGV CIWFSSLSLG EIVSKFPMEL 120
  121 HVGSAMLAPE KLKLVCSWYT GWLMLIGNWT MSTSITFAGA QLTISLILMT NSNLISEAHL 180
  181 IFYTVIVFYL VVTVVGLVNL KFARFIETIN KVCVYWIIYA IIFIDILLLV FHKGKFRSLK 240
  241 YALFHFDNNL SGYKSAFLSF IIGFQQSNFT LQGFSMLPAL ADEVKVPEKD IPRGMSNAVL 300
  301 LSAFSGVIFL IPIMLILPDN DLLFTNHKVL PIVNIFTKST DSVVLSFFLV LLILGNLLFS 360
  361 GIGSITTSSR AVYSFSRDQA IPYYDKWTYV EPDSQSKVPK NSVVLSMIIS YFLGLLALIS 420
  421 TAAFNAFIGA AVLCLCSATF IPLVLVLFTR RRAIRSAPVK IRYKFGWFIN IVSIVWLLLS 480
  481 MVSVCLPTQV PVTFKTMNYA LMVYVFCILV ITGLYFKWGK YNFRLPLADD IKAPIPSDAE 540
  541 ETVFELEDSN VEHTLNSGTT VKESVENNSE EGFIKVHPKS STENPFEENE ENVITDYGDE 600
  601 HHTAEQEFDL ADDRRYDI