YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKK0_YEAST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKYLNSFVD HLSEWSSRAF RNNSSSANQS ASNKELEQVF EQINAIVENH NNKLTTAFDK  60
   61 ISYRVAHKIT HLVESHSLVF NYATLVLIAS ALVVIGSFTS ISSIPFTALP PTREHSLFDP 120
  121 TDFDVDHDCH VIYRENDEDK KKKKKSKRFF DMMDEKHAII LPLTSGCTLL ALYFVIKKLH 180
  181 LNWLKYVVKI LNFNITLLNI PAGTFVYSYF LNSLFRNLSH LASWNPLVVL PRYRVTIADD 240
  241 NEDLNKIGGF VTNLNYKDGL TNSVVHKKTL DEIEKDHWMK HFYRRELVEP KDIKSKRQIS 300
  301 NMYLNSALIV SFVLSIVSTV YFYLSPNDWL ISNAVSMNMA IWSIAQLKLK NLKSGALILI 360
  361 ALFFYDICFV FGTDVMVTVA TNLDIPVKLS LPVKFNTAQN NFNFSILGLG DIALPGMFIA 420
  421 MCYKYDIWKW HLDHDDTEFH FLNWSYVGKY FITAMVSYVA SLVSAMVSLS IFNTAQPALL 480
  481 YIVPSLLIST ILVACWNKDF KQFWNFQYDT IEVDKSLKKA IEKKENSITY STFILSEYYN 540
  541 DADKYALLGD DVNENFDDDE EFVQEEDLSD SSEEELSEED LLDDESS

Type	Start	End	Confidence
Cytoplasmic	1	77	0.78
Transmembrane Helix	78	101	0.84
Non-Cytoplasmic	102	157	0.72
Transmembrane Helix	158	176	0.95
Cytoplasmic	177	301	0.80
Transmembrane Helix	302	323	0.92
Non-Cytoplasmic	324	328	0.81
Transmembrane Helix	329	347	0.86
Cytoplasmic	348	355	0.77
Transmembrane Helix	356	377	0.88
Non-Cytoplasmic	378	403	0.87
Transmembrane Helix	404	425	0.88
Cytoplasmic	426	446	0.89
Transmembrane Helix	447	469	0.89
Non-Cytoplasmic	470	477	0.70
Transmembrane Helix	478	496	0.96
Cytoplasmic	497	587	0.95