YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SFK1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQFKSPGNW LFIVPWIAFI PWYGMLIAML ICWASQGHPI YWFMHSEQFP VYISDIGATN  60
   61 LRPLFISCAG WQGLGYVITV ALEFFQRSGY LPFQLKKKDP SISDSTSYAE KLHSGKYLMP 120
  121 PYYTKDERNL IFAAFVLGSI GELALLFSSI FSTALYHRVH IAMVSVFVVF MFLSTCCLIA 180
  181 EYFLMGRHYA SVHPLASPHF NPQSSEKSFN QDYNTVDELP WYKWKGHVWN KFTISATLKV 240
  241 IWLTLAVVWA ICFGAINDRS KSACFEWLLA FWFGIIFMIL SADFYLGGRY RQSRYFNHVE 300
  301 SFSGYYKYDK ALGLYHSEDV LPSDDNAGVI ATETASSNIY NNSSSNESIQ VVV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.77
Transmembrane Helix	12	34	0.90
Non-Cytoplasmic	35	62	0.74
Transmembrane Helix	63	85	0.73
Cytoplasmic	86	129	0.79
Transmembrane Helix	130	151	0.93
Non-Cytoplasmic	152	160	0.58
Transmembrane Helix	161	184	0.89
Cytoplasmic	185	234	0.79
Transmembrane Helix	235	257	0.86
Non-Cytoplasmic	258	266	0.68
Transmembrane Helix	267	287	0.93
Cytoplasmic	288	353	0.81