YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MPH3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	101	0.91
Transmembrane Helix	102	124	0.65
Non-Cytoplasmic	125	144	0.73
Transmembrane Helix	145	166	0.76
Cytoplasmic	167	176	0.65
Transmembrane Helix	177	195	0.94
Non-Cytoplasmic	196	201	0.65
Transmembrane Helix	202	223	0.80
Cytoplasmic	224	233	0.68
Transmembrane Helix	234	254	0.79
Non-Cytoplasmic	255	274	0.90
Transmembrane Helix	275	298	0.86
Cytoplasmic	299	365	0.98
Transmembrane Helix	366	386	0.94
Non-Cytoplasmic	387	397	0.86
Transmembrane Helix	398	418	0.93
Cytoplasmic	419	426	0.87
Transmembrane Helix	427	448	0.91
Non-Cytoplasmic	449	458	0.77
Transmembrane Helix	459	480	0.92
Cytoplasmic	481	493	0.89
Transmembrane Helix	494	515	0.86
Non-Cytoplasmic	516	525	0.72
Transmembrane Helix	526	543	0.95
Cytoplasmic	544	602	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLSFLINR RKENTSDSNV YPGKAKSHEP SWIEMDDQTK KDGLDIVHVE FSPDTRAPSD  60
   61 SNKVITEIFD ATEDAKEADE SERGMPLATA LNTYPKAAAW SLLVSTTLIM EGYDTAILGA 120
  121 FYALPIFQRK FGSQNDKTGE WEISASWQIG LTLCYMAGEI VGLQLTGPSV DLVGNRYTLI 180
  181 IALFFLAAFT FILYFCNSLG MIAVGQALCG MPWGCFQCLT VSYASEICPL ALRYYLTTYS 240
  241 NLCWLFGQLF AAGIMKNSQK KYADSELGYK LPFALQWILP VPLALGIFFA PESPWWLVKK 300
  301 GRFDEARRSL RRTLSGKGPE KEILVTLEVD KIKVTIDKEK RLTSKEGSYS DCFEDKINRR 360
  361 RTRITCLCWA GQATCGSILI GYSTYFYEKA GVSTEMSFTF SIIQYCLGIC ATFLSWWASK 420
  421 YFGRYDLYAF GLAFQTIVFF IIGGLGCSST HGSKMGSGSL LMAVAFFYNL GIAPVVFCLV 480
  481 SEMPSSRLRT KTIILARNTY NVVSIICSVL ILYQLNSKKW NWGAKSGFFW GVLCFCTLIW 540
  541 AVVDLPETAG KTFVEINELF KLGVSARKFK STKVDPFVVK TPPKDVSHND PKGDIEASIA 600
  601 EE