YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT16
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.99
Transmembrane Helix	54	76	0.88
Non-Cytoplasmic	77	110	0.92
Transmembrane Helix	111	130	0.95
Cytoplasmic	131	139	0.75
Transmembrane Helix	140	159	0.94
Non-Cytoplasmic	160	168	0.80
Transmembrane Helix	169	189	0.92
Cytoplasmic	190	199	0.83
Transmembrane Helix	200	222	0.87
Non-Cytoplasmic	223	230	0.85
Transmembrane Helix	231	252	0.92
Cytoplasmic	253	316	0.97
Transmembrane Helix	317	335	0.84
Non-Cytoplasmic	336	355	0.76
Transmembrane Helix	356	377	0.89
Cytoplasmic	378	384	0.91
Transmembrane Helix	385	405	0.94
Non-Cytoplasmic	406	424	0.84
Transmembrane Helix	425	448	0.91
Cytoplasmic	449	464	0.81
Transmembrane Helix	465	482	0.91
Non-Cytoplasmic	483	487	0.69
Transmembrane Helix	488	508	0.91
Cytoplasmic	509	567	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEQSSPEI NADNLNSSAA DVHVQPPGEK EWSDGFYDKE VINGNTPDAP KRGFLGYLII  60
   61 YLLCYPVSFG GFLPGWDSGI TAGFINMDNF KMNFGSYKHS TGEYYLSNVR MGLLVAMFSV 120
  121 GCSIGGVAFA RLADTLGRRL AIVIVVLVYM VGAIIQISSN HKWYQYFVGK IIYGLGAGGC 180
  181 SVLCPMLLSE IAPTDLRGGL VSLYQLNMTF GIFLGYCSVY GTRKYSNTAQ WRIPVGLCFL 240
  241 WALIIIVGML LVPESPRYLI ECERHEEACV SIAKIDKVSP EDPWVLKQAD EINAGVLAQR 300
  301 ELGEASWKEL FSVKTKVLQR LITGILVQTF LQLTGENYFF FYGTTIFKSV GLTDGFETSI 360
  361 VLGTVNFFST IIAVMVVDKI GRRKCLLFGA ASMMACMVIF ASIGVKCLYP HGQDGPSSKG 420
  421 AGNAMIVFTC FYIFCFATTW APVAYIVVAE SFPSKVKSKA MSISTAFNWL WQFLIGFFTP 480
  481 FITGSIHFYY GYVFVGCLVA MFLYVFFFLP ETIGLSLEET QLLYEEGIKP WKSASWVPPS 540
  541 RRGASSRETE AKKKSWKEVL KFPKSFN