YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DAL5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.96
Transmembrane Helix	83	101	0.85
Non-Cytoplasmic	102	123	0.87
Transmembrane Helix	124	145	0.87
Cytoplasmic	146	153	0.84
Transmembrane Helix	154	173	0.93
Non-Cytoplasmic	174	178	0.92
Transmembrane Helix	179	202	0.90
Cytoplasmic	203	213	0.87
Transmembrane Helix	214	237	0.89
Non-Cytoplasmic	238	248	0.85
Transmembrane Helix	249	269	0.96
Cytoplasmic	270	317	0.97
Transmembrane Helix	318	341	0.89
Non-Cytoplasmic	342	357	0.85
Transmembrane Helix	358	379	0.91
Cytoplasmic	380	389	0.88
Transmembrane Helix	390	411	0.94
Non-Cytoplasmic	412	420	0.80
Transmembrane Helix	421	440	0.94
Cytoplasmic	441	450	0.79
Transmembrane Helix	451	471	0.89
Non-Cytoplasmic	472	480	0.82
Transmembrane Helix	481	502	0.94
Cytoplasmic	503	543	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADASTNSN ASLDEKNLNI TSEAEIKNED VTAEPVLSTV LSPNGKIVYI SDKVDEAMKL  60
   61 AEEAKEIEVT PEEDRKLRWK IDYCMFPLMC ILYAVQFMDK ISTSSAAVMG LRTDLKMHGD 120
  121 QYSWVTSAFY FGYLFMNLGP VQFIFQRTSH MSKMLAVFIV IWGMLLALHA APTVKYPSFI 180
  181 VLRVLLGCAE SVVTPCFTII TAQYWKTEEQ FTRVSIWFGM NGLGSILINA IAYGVYIHQD 240
  241 SYAIKGWRTL FVITGVITIF IGILIFLWIP DDPSKARFLS KREKLMVVQR IRSNQQGFGN 300
  301 HEIKKYQIIE ALKDVRTWLY FLFTVSSNIP NGGISSFMSI LLNSDFGYSS KETLLMGLPT 360
  361 GAVELVGCPL FGILAVYAAN KKIPFWKYKL SWAIFAAVLA LIASCMLGFA TNSKKARLAG 420
  421 AYLWYISPVS FICVLSNISA NSSGYSKKWT VSSINLVAYA AANLAGPQTF IAKQAPKYHG 480
  481 AKVAMVVCYA VMIVLLSILL IVNLRENKRR DKIAAERGFP EETENLEFSD LTDFENPNFR 540
  541 YTL