YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJR124C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	41	0.81
Non-Cytoplasmic	42	50	0.83
Transmembrane Helix	51	72	0.93
Cytoplasmic	73	80	0.89
Transmembrane Helix	81	114	0.76
Non-Cytoplasmic	115	143	0.83
Transmembrane Helix	144	167	0.92
Cytoplasmic	168	256	0.50
Transmembrane Helix	257	281	0.65
Non-Cytoplasmic	282	287	0.54
Transmembrane Helix	288	311	0.80
Cytoplasmic	312	319	0.58
Transmembrane Helix	320	343	0.71
Non-Cytoplasmic	344	348	0.50
Transmembrane Helix	349	367	0.50
Cytoplasmic	368	385	0.50
Transmembrane Helix	386	406	0.52
Non-Cytoplasmic	407	413	0.77
Transmembrane Helix	414	437	0.92
Cytoplasmic	438	448	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPEIFVKFK CASRDIKLLW ASVFLRLLSY GLTNQVLTLF LNAINMTEDK IGLFMSLTLA  60
   61 GDVICSYILT WYADSWGRRR VLVYGCAMML LSGLVFSFSE NFTLLLVFAI FGVISPSSDE 120
  121 VGPFKSIEEA MIAHLSPHNA RPEIYAIHAL VGTIGSALGA IICGIFVDLL KRTGLAATDL 180
  181 QCYKLVFLLY AFFAFCKMVI MLLLSDATEL DGHYEHTDCN EETAEPLDVN DETAPLMRQA 240
  241 THPEERSNKL SKETVSVLMK LLVIFMVDSL GSGFMTSGWM VYYYSKQFLM GSLALGTLFF 300
  301 ITQLVMASST IPSSIIARCF GPVRATLLVQ IPSGIFSILI PMAKNYLPLS ILFLNLHFAT 360
  361 TAMDVTPRQI LLTNIIKPRD LTKVMGVVNI GKTFARCVGP IFTGILANNN YLWLCYIISG 420
  421 SLVITADLIL ACMFLGVDAK IKKQMNRH