YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TDA4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNANSTTTAI GLTSPFEKLS FFPHSSNLIL AHLHEIIFSF VFYQLAFSVV APFLNKVVFR  60
   61 KHYTTIRDPL LKIDFNVHTV SMIQAVVSNT VLLPTLTTPM HYNVVTYTDS YSSMVSSLSA 120
  121 GYFIWDLTMC VRYFKLYGLE FTGHAIGSVY VMLLSLRPFC QPWIGRFLIY EASTPFVNIN 180
  181 WFIMQCNAKS KNSIPLWFNV VNGLLLMTVF FVVRICWGSI ASALLFRQMW KVRDELPKFS 240
  241 AVTMMSLNIF MNLLNVLWFK KMIRIAKKLA KPAPTSKLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.81
Transmembrane Helix	31	54	0.80
Cytoplasmic	55	74	0.78
Transmembrane Helix	75	96	0.74
Non-Cytoplasmic	97	106	0.70
Transmembrane Helix	107	125	0.74
Cytoplasmic	126	135	0.60
Transmembrane Helix	136	156	0.81
Non-Cytoplasmic	157	163	0.63
Transmembrane Helix	164	184	0.74
Cytoplasmic	185	195	0.83
Transmembrane Helix	196	221	0.82
Non-Cytoplasmic	222	238	0.81
Transmembrane Helix	239	259	0.93
Cytoplasmic	260	279	0.93