YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GEF1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.98
Transmembrane Helix	75	96	0.92
Non-Cytoplasmic	97	156	0.96
Transmembrane Helix	157	179	0.91
Cytoplasmic	180	203	0.91
Transmembrane Helix	204	225	0.79
Non-Cytoplasmic	226	261	0.71
Transmembrane Helix	262	285	0.89
Cytoplasmic	286	298	0.66
Transmembrane Helix	299	316	0.74
Non-Cytoplasmic	317	336	0.65
Transmembrane Helix	337	357	0.86
Cytoplasmic	358	374	0.61
Transmembrane Helix	375	393	0.81
Non-Cytoplasmic	394	436	0.58
Transmembrane Helix	437	459	0.72
Cytoplasmic	460	462	0.37
Transmembrane Helix	463	486	0.75
Non-Cytoplasmic	487	498	0.39
Transmembrane Helix	499	525	0.78
Cytoplasmic	526	528	0.33
Transmembrane Helix	529	553	0.76
Non-Cytoplasmic	554	779	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTTYVPINQ PIGDGEDVID TNRFTNIPET QNFDQFVTID KIAEENRPLS VDSDREFLNS  60
   61 KYRHYREVIW DRAKTFITLS STAIVIGCIA GFLQVFTETL VNWKTGHCQR NWLLNKSFCC 120
  121 NGVVNEVTST SNLLLKRQEF ECEAQGLWIA WKGHVSPFII FMLLSVLFAL ISTLLVKYVA 180
  181 PMATGSGISE IKVWVSGFEY NKEFLGFLTL VIKSVALPLA ISSGLSVGKE GPSVHYATCC 240
  241 GYLLTKWLLR DTLTYSSQYE YITAASGAGV AVAFGAPIGG VLFGLEEIAS ANRFNSSTLW 300
  301 KSYYVALVAI TTLKYIDPFR NGRVILFNVT YDRDWKVQEI PIFIALGIFG GLYGKYISKW 360
  361 NINFIHFRKM YLSSWPVQEV LFLATLTALI SYFNEFLKLD MTESMGILFH ECVKNDNTST 420
  421 FSHRLCQLDE NTHAFEFLKI FTSLCFATVI RALLVVVSYG ARVPAGIFVP SMAVGATFGR 480
  481 AVSLLVERFI SGPSVITPGA YAFLGAAATL SGITNLTLTV VVIMFELTGA FMYIIPLMIV 540
  541 VAITRIILST SGISGGIADQ MIMVNGFPYL EDEQDEEEEE TLEKYTAEQL MSSKLITINE 600
  601 TIYLSELESL LYDSASEYSV HGFPITKDED KFEKEKRCIG YVLKRHLASK IMMQSVNSTK 660
  661 AQTTLVYFNK SNEELGHREN CIGFKDIMNE SPISVKKAVP VTLLFRMFKE LGCKTIIVEE 720
  721 SGILKGLVTA KDILRFKRIK YREVHGAKFT YNEALDRRCW SVIHFIIKRF TTNRNGNVI