YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.96
Transmembrane Helix	109	129	0.91
Non-Cytoplasmic	130	137	0.79
Transmembrane Helix	138	158	0.57
Cytoplasmic	159	177	0.61
Transmembrane Helix	178	198	0.90
Non-Cytoplasmic	199	210	0.56
Transmembrane Helix	211	237	0.70
Cytoplasmic	238	276	0.60
Transmembrane Helix	277	299	0.86
Non-Cytoplasmic	300	314	0.66
Transmembrane Helix	315	337	0.66
Cytoplasmic	338	352	0.44
Transmembrane Helix	353	377	0.82
Non-Cytoplasmic	378	427	0.55
Transmembrane Helix	428	449	0.89
Cytoplasmic	450	482	0.54
Transmembrane Helix	483	503	0.91
Non-Cytoplasmic	504	508	0.44
Transmembrane Helix	509	529	0.89
Cytoplasmic	530	590	0.46
Transmembrane Helix	591	610	0.87
Non-Cytoplasmic	611	632	0.65
Transmembrane Helix	633	647	0.38
Cytoplasmic	648	659	0.48
Transmembrane Helix	660	680	0.91
Non-Cytoplasmic	681	706	0.62
Transmembrane Helix	707	724	0.68
Cytoplasmic	725	734	0.84
Transmembrane Helix	735	758	0.89
Non-Cytoplasmic	759	799	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIYRESDS LESEPSPTPT TIPIQINMEE EKKDAFVKNI DEDVNNLTAT TDEEDRDPES  60
   61 QKFDRHSIQE EGLVWKGDPT YLPNSPYPEV RSAVSIEDDP TIRLNHWRTW FLTTVFVVVF 120
  121 AGVNQFFSLR YPSLEINFLV AQVVCYPIGR ILALLPDWKC SKVPFFDLNP GPFTKKEHAV 180
  181 VTIAVALTSS TAYAMYILNA QGSFYNMKLN VGYQFLLVWT SQMIGYGAAG LTRRWVVNPA 240
  241 SSIWPQTLIS VSLFDSLHSR KVEKTVANGW TMPRYRFFLI VLIGSFIWYW VPGFLFTGLS 300
  301 YFNVILWGSK TRHNFIANTI FGTQSGLGAL PITFDYTQVS QAMSGSVFAT PFYVSANTYA 360
  361 SVLIFFVIVL PCLYFTNTWY AKYMPVISGS TYDNTQNKYN VTKILNEDYS INLEKYKEYS 420
  421 PVFVPFSYLL SYALNFAAVI AVFVHCILYH GKDIVAKFKD RKNGGTDIHM RIYSKNYKDC 480
  481 PDWWYLLLQI VMIGLGFVAV CCFDTKFPAW AFVIAILISL VNFIPQGILE AMTNQHVGLN 540
  541 IITELICGYM LPLRPMANLL FKLYGFIVMR QGLNLSRDLK LAMYMKVSPR LIFAVQIYAT 600
  601 IISGMVNVGV QEWMMHNIDG LCTTDQPNGF TCANGRTVFN ASIIWSLPKY LFSSGRIYNP 660
  661 LMWFFLIGLL FPLAVYAVQW KFPKFKFAKH IHTPVFFTGP GNIPPSTPYN YSLFFAMSFC 720
  721 LNLIRKRWRA WFNKYNFVMG AGVEAGVAIS VVIIFLCVQY PGGKLSWWGN NVWKRTYDND 780
  781 YKKFYTLKKG ETFGYDKWW