YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YJL163C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.99
Transmembrane Helix	78	100	0.91
Non-Cytoplasmic	101	124	0.86
Transmembrane Helix	125	146	0.91
Cytoplasmic	147	160	0.88
Transmembrane Helix	161	180	0.92
Non-Cytoplasmic	181	188	0.80
Transmembrane Helix	189	209	0.95
Cytoplasmic	210	225	0.83
Transmembrane Helix	226	249	0.87
Non-Cytoplasmic	250	257	0.86
Transmembrane Helix	258	280	0.91
Cytoplasmic	281	352	0.99
Transmembrane Helix	353	376	0.91
Non-Cytoplasmic	377	390	0.85
Transmembrane Helix	391	413	0.91
Cytoplasmic	414	430	0.89
Transmembrane Helix	431	451	0.94
Non-Cytoplasmic	452	458	0.83
Transmembrane Helix	459	481	0.89
Cytoplasmic	482	492	0.89
Transmembrane Helix	493	515	0.85
Non-Cytoplasmic	516	524	0.84
Transmembrane Helix	525	547	0.90
Cytoplasmic	548	555	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEDETTRL MSSDEMDYLL ETAGINALEE IISQNDSTGI NLDTNETAQD SSYDSIRRSP  60
   61 SILSVAKSVE GEHGRRKLLC LYGLVMIICI AESISMTATI PLVMDKVAEG ISDENGHYDS 120
  121 VAVQTIVSSI SSSTMMIAGA ISIFMAGKWG ELSDRIGRVR VFKYMSGIRV IGLLTHVFTL 180
  181 SSKMKYHKWA IVLTACIVPS FGGLFALVAN GNSYVSDIVK TEHRMVTIGI MMSCIYATMG 240
  241 VGPMFGSFLV KWTHGNGFIP IYTSIAFVIL ALIICETIMV EPRHETQMAH SQSTYTKRRE 300
  301 KLRSQSGSDD ARNYQSVTYG KFQIMRLMDL LAPVKKLWLK PDSAGSLVPR HTVILLIVLD 360
  361 ILFVCGTTSC MPALILFSTY EYKWHAVELG YFISILGIGR GVVLLVVSPT LLYTLKRIYQ 420
  421 HLNHSIDKID IFCIQFSMIV ITLSLFVMIR FGEKTPTSMI IFALLQALSA FCSPTLQSGI 480
  481 IKYTSKKHTG EMFGAMALVR SCVMLVIPPI LLKLYGSTVS VNPSLFMYIP FSTSIVAILL 540
  541 TFFLRIYKNP PLDGP