YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LCB3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDGLNTSNI RKRARTLSNP NDFQEPNYLL DPGNHPSDHF RTRMSKFRFN IREKLLVFTN  60
   61 NQSFTLSRWQ KKYRSAFNDL YFTYTSLMGS HTFYVLCLPM PVWFGYFETT KDMVYILGYS 120
  121 IYLSGFFKDY WCLPRPRAPP LHRITLSEYT TKEYGAPSSH TANATGVSLL FLYNIWRMQE 180
  181 SSVMVQLLLS CVVLFYYMTL VFGRIYCGMH GILDLVSGGL IGIVCFIVRM YFKYRFPGLR 240
  241 IEEHWWFPLF SVGWGLLLLF KHVKPVDECP CFQDSVAFMG VVSGIECCDW LGKVFGVTLV 300
  301 YNLEPNCGWR LTLARLLVGL PCVVIWKYVI SKPMIYTLLI KVFHLKDDRN VAARKRLEAT 360
  361 HKEGASKYEC PLYIGEPKID ILGRFIIYAG VPFTVVMCSP VLFSLLNIA

Type	Start	End	Confidence
Cytoplasmic	1	79	0.96
Transmembrane Helix	80	103	0.81
Non-Cytoplasmic	104	112	0.82
Transmembrane Helix	113	132	0.64
Cytoplasmic	133	182	0.70
Transmembrane Helix	183	203	0.91
Non-Cytoplasmic	204	210	0.66
Transmembrane Helix	211	232	0.92
Cytoplasmic	233	243	0.87
Transmembrane Helix	244	263	0.85
Non-Cytoplasmic	264	310	0.61
Transmembrane Helix	311	330	0.86
Cytoplasmic	331	384	0.62
Transmembrane Helix	385	406	0.91
Non-Cytoplasmic	407	409	0.54