YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KHA1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	42	0.92
Cytoplasmic	43	51	0.84
Transmembrane Helix	52	71	0.91
Non-Cytoplasmic	72	87	0.73
Transmembrane Helix	88	108	0.86
Cytoplasmic	109	117	0.86
Transmembrane Helix	118	140	0.94
Non-Cytoplasmic	141	154	0.88
Transmembrane Helix	155	178	0.88
Cytoplasmic	179	188	0.92
Transmembrane Helix	189	213	0.89
Non-Cytoplasmic	214	222	0.84
Transmembrane Helix	223	245	0.88
Cytoplasmic	246	261	0.94
Transmembrane Helix	262	284	0.87
Non-Cytoplasmic	285	316	0.80
Transmembrane Helix	317	336	0.87
Cytoplasmic	337	341	0.80
Transmembrane Helix	342	364	0.88
Non-Cytoplasmic	365	373	0.71
Transmembrane Helix	374	396	0.82
Cytoplasmic	397	404	0.73
Transmembrane Helix	405	424	0.89
Non-Cytoplasmic	425	873	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTVGGILS GVNPFHYNSS SPLTLFLFQA CLILLVCNLI HIPFSMMRQP KVISEVISGV  60
   61 ILGPTIFGQI PNYTNTIFPT SSIPGLNLVA NLGIILFMFF LGLEVDIAFI KKHLKKALVI 120
  121 GIVTLAVPFG FGCLLAIPLF HTYANKTEGE RHIKFSVFMV FIAVSISVTA FPVLCRILNE 180
  181 LRLIKDRAGI VVLAAGIIND IMGWILLALS IILSSAEGSP VNTVYILLIT FAWFLIYFFP 240
  241 LKYLLRWVLI RTHELDRSKP SPLATMCILF IMFISAYFTD IIGVHPIFGA FIAGLVVPRD 300
  301 DHYVVKLTER MEDIPNIVFI PIYFAVAGLN VDLTLLNEGR DWGYVFATIG IAIFTKIISG 360
  361 TLTAKLTGLF WREATAAGVL MSCKGIVEIV VLTVGLNAGI ISRKIFGMFV LMALVSTFVT 420
  421 TPLTQLVYPD SYRDGVRKSL STPAEDDGAA DGLDSEGVDK TEINTQLNSL ADVSKYRIGE 480
  481 LTTVINTTEA ISPSLKLLNY LSLGVSPKPK NNKHKNETSL SRMTTATDST LKSNTFKIKK 540
  541 MVHIWSKSVD DVDTNLSVID EKLTPFEGVG ALRAIHLRLL TERTTDLLQS SSLYNDDPHF 600
  601 TANTDSLLQI FDIFSNLSKI PFSSEVIFST MREKAANIAT MKMDSTDLIL LPLKGASYEY 660
  661 RGSPVFIDEK YANFDHIYSH LLGLNELSST FFKSIFQSLK ANFAVQISNT YGRLNADRFK 720
  721 RKRFNLLLPK PYLTQSDYLG LYLLLLICYR DGYNNDNASC SIFINSKNID FAKDLSTAFA 780
  781 EHDWLNESTI KIVDIPFETK VPEEAIEKPS FIETVLDVGL SDTALADIEE TTFIIGEDLP 840
  841 DESEPFSEEV RTVIFEGSNR RFDTLIVHHF SSE