YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHC3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	31	0.91
Non-Cytoplasmic	32	40	0.74
Transmembrane Helix	41	62	0.80
Cytoplasmic	63	68	0.80
Transmembrane Helix	69	87	0.81
Non-Cytoplasmic	88	91	0.51
Transmembrane Helix	92	114	0.75
Cytoplasmic	115	122	0.57
Transmembrane Helix	123	144	0.89
Non-Cytoplasmic	145	151	0.52
Transmembrane Helix	152	170	0.88
Cytoplasmic	171	227	0.77
Transmembrane Helix	228	246	0.75
Non-Cytoplasmic	247	276	0.74
Transmembrane Helix	277	296	0.79
Cytoplasmic	297	303	0.74
Transmembrane Helix	304	325	0.91
Non-Cytoplasmic	326	331	0.67
Transmembrane Helix	332	354	0.64
Cytoplasmic	355	365	0.49
Transmembrane Helix	366	389	0.83
Non-Cytoplasmic	390	408	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKSHQIYC YFWLFGLINN VLYVVILSAA VDIVGPTLPK SLVLLADIFP SLAIKLCSPF  60
   61 FIDRIKYSYR IWSLITMSCL GMFLVSFKNL FVCLLGISFA SISSGFGEVT FLQLTHYYKQ 120
  121 ISLNGWSSGT GGAGIIGGAS YMFLTSIFKV PVKLTLLVFS LLPFAFLFYF KLESNDTNLT 180
  181 YQSLQQIDEA EDDQLVPFPV AFTHTNASQS LYSTRQHILQ TVKRLRRLVF PYMVPLTTVY 240
  241 LFEYLINQAV APTLLFPING DERSKSMPFF FHKYRDIYVT YGTLYQLGVF ISRSFGHLMR 300
  301 MRSLYILAFL QGVNLCITVL QSWFYVTHSP WAVMILIFYE GFLGGASYVN TFLNILEQED 360
  361 PDETEFAMGA VSIADSFGVF LAALLGLGLE PKLCRHQIAD DRPWCRME