YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mub-PD
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDNNTSSSA GGASIKHEDP SVTLTIRLIM QGKEVGSIIG KKGEIVNRFR EESGAKINIS  60
   61 DGSCPERIVT VSGTTNAIFS AFTLITKKFE EWCSQFNDVG KVGKTQIPIR LIVPASQCGS 120
  121 LIGKSGSKIK EIRQTTGCSI QVASEMLPNS TERAVTLSGS AEQITQCIYQ ICLVMLESPP 180
  181 RGATIPYRPK PQVTGPVILA NGQAFTIQGN YAVPTQEVAK NPLASLAALG LAGMNPASTG 240
  241 GINHTAALAA LAGSQLRTAN PANRAQQQQH EMTVSNDLIG CIIGKGGTKI AEIRQISGAM 300
  301 IRISNCEERE GGNTDRTITI SGNPDSVALA QYLINMSVEL QKANLLEQAQ SQQNGGAAAA 360
  361 PGAAAAGVAA VTGAAAPTSA TNGAITTVTL TSGTGVVGAG AAGAAGVANG ANPAANGGGS 420
  421 NGTISATGYA SANGGQATNG SVGVNPAAAA ALSSPLASAL QLLTKPGALS ALSNLSALDL 480
  481 LNLTTLGNTN GAGANPGGPP VQTTGVNRAK GHYATSRFRQ HQTETGGEAE KPRNKFNPY

Type	Start	End	Confidence
Non-Cytoplasmic	1	354	0.95
Transmembrane Helix	355	376	0.78
Cytoplasmic	377	384	0.65
Transmembrane Helix	385	408	0.73
Non-Cytoplasmic	409	443	0.85
Transmembrane Helix	444	463	0.62
Cytoplasmic	464	539	0.71