YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Dscam-PAU
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE  60
   61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
  121 NQFGSIISRD VHVRAVVIQS YESEADNEYV IRGNSVVMKC EIPSYVADFV FVDLWLDSEG 180
  181 RNYYPNNAAE TDGKYLVLPS GELHIREVGP EDGYKSYQCR TKHRLTGETR LSATKGRLVI 240
  241 TEPISAKAPV LAVDTKWSGI ERHRDMDIVL LCPAQAYPVP ISRWYKFIEG TTRKQAVVLN 300
  301 DRVKQVSGTL IIKDAVVEDS GKYLCVVNNS VGGESVETVL TVTAPLSAKI DPPTQTVDFG 360
  361 RPAVFTCQYT GNPIKTVSWM KDGKAIGHSE PVLRIESVKK EDKGMYQCFV RNDQESAEAS 420
  421 AELKLGGRFD PPVIRQAFQE ETMEPGPSVF LKCVAGGNPT PEISWELDGK KIANNDRYQV 480
  481 GQYVTVNGDV VSYLNITSVH ANDGGLYKCI AKSKVGVAEH SAKLNVYGLP YIRQMEKKAI 540
  541 VAGETLIVTC PVAGYPIDSI VWERDNRALP INRKQKVFPN GTLIIENVER NSDQATYTCV 600
  601 AKNQEGYSAR GSLEVQVMVL PQVVPFDFGE ESINELDMVS ASCTVNKGDL PVDIYWTKNG 660
  661 GRVYTNDGLI VTRNSQRLSV LSIESVRARH AGNYSCVATN NAGAITQSAM LAVNVPPRWI 720
  721 LEPTDKAFAQ GSDAKVECKA DGFPKPQVTW KKAVGDTPGE YKDLKKSDNI RVEEGTLHVD 780
  781 NIQKTNEGYY LCEAINGIGS GLSAVIMISV QAPPEFTEKL RNQTARRGEP AVLQCEAKGE 840
  841 KPIGILWNMN NMRLDPKNDN RYTIREEILS TGVMSSLSIK RTERSDSALF TCVATNAFGS 900
  901 DDASINMIVQ EVPEMPYALK VLDKSGRSVQ LSWAQPYDGN SPLDRYIIEF KRSRASWSEI 960
  961 DRVIVPGHTT EAQVQKLSPA TTYNIRIVAE NAIGTSQSSE AVTIITAEEA PSGKPQNIKV1020
 1021 EPVNQTTMRV TWKPPPRTEW NGEILGYYVG YKLSNTNSSY VFETINFITE EGKEHNLELQ1080
 1081 NLRVYTQYSV VIQAFNKIGA GPLSEEEKQF TAEGTPSQPP SDTACTTLTS QTIRVGWVSP1140
 1141 PLESANGVIK TYKVVYAPSD EWYDETKRHY KKTASSDTVL HGLKKYTNYT MQVLATTAGG1200
 1201 DGVRSVPIHC QTEPDVPEAP TDVKALVMGN AAILVSWRPP AQPNGIITQY TVYSKAEGAE1260
 1261 TETKTQKVPH YQMSFEATEL EKNKPYEFWV TASTTIGEGQ QSKSIVAMPS DQVPAKIASF1320
 1321 DDTFTATFKE DAKMPCLAVG APQPEITWKI KGVEFSANDR MRVLPDGSLL IKSVNRQDAG1380
 1381 DYSCHAENSI AKDSITHKLI VLAPPQSPHV TLSATTTDAL TVKLKPHEGD TAPLHGYTLH1440
 1441 YKPEFGEWET SEVSVDSQKH NIEGLLCGSR YQVYATGFNN IGAGEASDIL NTRTKGQKPK1500
 1501 LPEKPRFIEV SSNSVSLHFK AWKDGGCPMS HFVVESKKRD QIEWNQISNN VKPDNNYVVL1560
 1561 DLEPATWYNL RITAHNSAGF TVAEYDFATL TVTGGTIAPS RDLPELSAED TIRIILSNLN1620
 1621 LVVPVVAALL VIIIAIIVIC ILRSKGNHHK DDVVYNQTMG PGATLDKRRP DLRDELGYIA1680
 1681 PPNRKLPPVP GSNYNTCDRI KRGRGGLRSN HSTWDPRRNP NLYEELKAPP VPMHGNHYGH1740
 1741 AHGNAECHYR HPGMEDEICP YATFHLLGFR EEMDPTKAMN FQTFPHQNGH AGPVPGHAGT1800
 1801 MLPPGHPGHV HSRSGSQSMP RANRYQRKNS QGGQSSIYTP APEYDDPANC AEEDQYRRYT1860
 1861 RVNSQGGSLY SGPGPEYDDP ANCAPEEDQY GSQYGGPYGQ PYDHYGSRGS MGRRSIGSAR1920
 1921 NPGNGSPEPP PPPPRNHDMS NSSFNDSKES NEISEAECDR DHGPRGNYGA VKRSPQPKDQ1980
 1981 RTTEEMRKLI ERNETGPKQL QLQQANGAGF TAYDTMAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle