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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Dscam-PBC
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE  60
   61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
  121 NQFGSIISRD VHVRAVVKQF FESQVYDEYV IKGNAAIFKC QTPSFVADHI DITDWIDTEG 180
  181 EVFTKNITDG KYLVLPSGEL HIREVGPEDG YKSYQCRTKH RLTGETRLSA TKGRLVITEP 240
  241 IGSVPPKITS LHDKFQVLQV KLAEDFSMQC PGQAYPVPIV RWYKFIEGTT RKQAVVLNDR 300
  301 VKQVSGTLII KDAVVEDSGK YLCVVNNSVG GESVETVLTV TAPLSAKIDP PTQTVDFGRP 360
  361 AVFTCQYTGN PIKTVSWMKD GKAIGHSEPV LRIESVKKED KGMYQCFVRN DQESAEASAE 420
  421 LKLGGRFDPP VIRQAFQEET MEPGPSVFLK CVAGGNPTPE ISWELDGKKI ANNDRYQVGQ 480
  481 YVTVNGDVVS YLNITSVHAN DGGLYKCIAK SKVGVAEHSA KLNVYGLPYI RQMEKKAIVA 540
  541 GETLIVTCPV AGYPIDSIVW ERDNRALPIN RKQKVFPNGT LIIENVERNS DQATYTCVAK 600
  601 NQEGYSARGS LEVQVMVPPK LAPLPVNSPL YVGDYYQLTC AVVHGDAPFN ITWYYNNEPA 660
  661 GDLAGVTILM HGRRSSSLNI ESVGGDHAGN YTCKGANRAG ETTAETHLSV KVPPRWILEP 720
  721 TDKAFAQGSD AKVECKADGF PKPQVTWKKA VGDTPGEYKD LKKSDNIRVE EGTLHVDNIQ 780
  781 KTNEGYYLCE AINGIGSGLS AVIMISVQAP PEFTEKLRNQ TARRGEPAVL QCEAKGEKPI 840
  841 GILWNMNNMR LDPKNDNRYT IREEILSTGV MSSLSIKRTE RSDSALFTCV ATNAFGSDDA 900
  901 SINMIVQEVP EMPYALKVLD KSGRSVQLSW AQPYDGNSPL DRYIIEFKRS RASWSEIDRV 960
  961 IVPGHTTEAQ VQKLSPATTY NIRIVAENAI GTSQSSEAVT IITAEEAPSG KPQNIKVEPV1020
 1021 NQTTMRVTWK PPPRTEWNGE ILGYYVGYKL SNTNSSYVFE TINFITEEGK EHNLELQNLR1080
 1081 VYTQYSVVIQ AFNKIGAGPL SEEEKQFTAE GTPSQPPSDT ACTTLTSQTI RVGWVSPPLE1140
 1141 SANGVIKTYK VVYAPSDEWY DETKRHYKKT ASSDTVLHGL KKYTNYTMQV LATTAGGDGV1200
 1201 RSVPIHCQTE PDVPEAPTDV KALVMGNAAI LVSWRPPAQP NGIITQYTVY SKAEGAETET1260
 1261 KTQKVPHYQM SFEATELEKN KPYEFWVTAS TTIGEGQQSK SIVAMPSDQV PAKIASFDDT1320
 1321 FTATFKEDAK MPCLAVGAPQ PEITWKIKGV EFSANDRMRV LPDGSLLIKS VNRQDAGDYS1380
 1381 CHAENSIAKD SITHKLIVLA PPQSPHVTLS ATTTDALTVK LKPHEGDTAP LHGYTLHYKP1440
 1441 EFGEWETSEV SVDSQKHNIE GLLCGSRYQV YATGFNNIGA GEASDILNTR TKGQKPKLPE1500
 1501 KPRFIEVSSN SVSLHFKAWK DGGCPMSHFV VESKKRDQIE WNQISNNVKP DNNYVVLDLE1560
 1561 PATWYNLRIT AHNSAGFTVA EYDFATLTVT GGTIAPLDDG SGHGNVHTRI RLPAWMPEWL1620
 1621 DLNFMVPLIA TVVVVAVGIC VVCVALSRRR ADDMRGGQKD VYYDVVYNQT MGPGATLDKR1680
 1681 RPDLRDELGY IAPPNRKLPP VPGSNYNTCD RIKRGRGGLR SNHSTWDPRR NPNLYEELKA1740
 1741 PPVPMHGNHY GHAHGNAECH YRHPGMEDEI CPYATFHLLG FREEMDPTKA MNFQTFPHQN1800
 1801 GHAGPVPGHA GTMLPPGHPG HVHSRSGSQS MPRANRYQRK NSQGGQSSIY TPAPEYDDPA1860
 1861 NCAEEDQYRR YTRVNSQGGS LYSGPGPEYD DPANCAPEED QYGSQYGGPY GQPYDHYGSR1920
 1921 GSMGRRSIGS ARNPGNGSPE PPPPPPRNHD MSNSSFNDSK ESNEISEAEC DRDHGPRGNY1980
 1981 GAVKRSPQPK DQRTTEEMRK LIERNETGPK QLQLQQANGA GFTAYDTMAV 

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