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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Dscam-PAQ
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE  60
   61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
  121 NQFGSIISRD VHVRAVVSQF YITEAENEYV IKGNAAVVKC KIPSFVADFV QVEAWVDEEG 180
  181 MELWRNNATD AYDGKYLVLP SGELHIREVG PEDGYKSYQC RTKHRLTGET RLSATKGRLV 240
  241 ITEPVGTVSP KISTGEDFKH LKGKSSQDLS ILCPAQAYPQ PFFRWYKFIE GTTRKQAVVL 300
  301 NDRVKQVSGT LIIKDAVVED SGKYLCVVNN SVGGESVETV LTVTAPLSAK IDPPTQTVDF 360
  361 GRPAVFTCQY TGNPIKTVSW MKDGKAIGHS EPVLRIESVK KEDKGMYQCF VRNDQESAEA 420
  421 SAELKLGGRF DPPVIRQAFQ EETMEPGPSV FLKCVAGGNP TPEISWELDG KKIANNDRYQ 480
  481 VGQYVTVNGD VVSYLNITSV HANDGGLYKC IAKSKVGVAE HSAKLNVYGL PYIRQMEKKA 540
  541 IVAGETLIVT CPVAGYPIDS IVWERDNRAL PINRKQKVFP NGTLIIENVE RNSDQATYTC 600
  601 VAKNQEGYSA RGSLEVQVMV APKIAPFDFG DEPSNFGESA SVQCLVTSGD FPVSFAWLFN 660
  661 GREINENVYD VSMVKLGKKI SALSIDIVRD HHAGNYTCVA VNRATSVNFT AELVVNVPPR 720
  721 WILEPTDKAF AQGSDAKVEC KADGFPKPQV TWKKAVGDTP GEYKDLKKSD NIRVEEGTLH 780
  781 VDNIQKTNEG YYLCEAINGI GSGLSAVIMI SVQAPPEFTE KLRNQTARRG EPAVLQCEAK 840
  841 GEKPIGILWN MNNMRLDPKN DNRYTIREEI LSTGVMSSLS IKRTERSDSA LFTCVATNAF 900
  901 GSDDASINMI VQEVPEMPYA LKVLDKSGRS VQLSWAQPYD GNSPLDRYII EFKRSRASWS 960
  961 EIDRVIVPGH TTEAQVQKLS PATTYNIRIV AENAIGTSQS SEAVTIITAE EAPSGKPQNI1020
 1021 KVEPVNQTTM RVTWKPPPRT EWNGEILGYY VGYKLSNTNS SYVFETINFI TEEGKEHNLE1080
 1081 LQNLRVYTQY SVVIQAFNKI GAGPLSEEEK QFTAEGTPSQ PPSDTACTTL TSQTIRVGWV1140
 1141 SPPLESANGV IKTYKVVYAP SDEWYDETKR HYKKTASSDT VLHGLKKYTN YTMQVLATTA1200
 1201 GGDGVRSVPI HCQTEPDVPE APTDVKALVM GNAAILVSWR PPAQPNGIIT QYTVYSKAEG1260
 1261 AETETKTQKV PHYQMSFEAT ELEKNKPYEF WVTASTTIGE GQQSKSIVAM PSDQVPAKIA1320
 1321 SFDDTFTATF KEDAKMPCLA VGAPQPEITW KIKGVEFSAN DRMRVLPDGS LLIKSVNRQD1380
 1381 AGDYSCHAEN SIAKDSITHK LIVLAPPQSP HVTLSATTTD ALTVKLKPHE GDTAPLHGYT1440
 1441 LHYKPEFGEW ETSEVSVDSQ KHNIEGLLCG SRYQVYATGF NNIGAGEASD ILNTRTKGQK1500
 1501 PKLPEKPRFI EVSSNSVSLH FKAWKDGGCP MSHFVVESKK RDQIEWNQIS NNVKPDNNYV1560
 1561 VLDLEPATWY NLRITAHNSA GFTVAEYDFA TLTVTGGTIA PSRDLPELSA EDTIRIILSN1620
 1621 LNLVVPVVAA LLVIIIAIIV ICILRSKGNH HKDDVVYNQT MGPGATLDKR RPDLRDELGY1680
 1681 IAPPNRKLPP VPGSNYNTCD RIKRGRGGLR SNHSTWDPRR NPNLYEELKA PPVPMHGNHY1740
 1741 GHAHGNAECH YRHPGMEDEI CPYATFHLLG FREEMDPTKA MNFQTFPHQN GHAGPVPGHA1800
 1801 GTMLPPGHPG HVHSRSGSQS MPRANRYQRK NSQGGQSSIY TPAPEYDDPA NCAEEDQYRR1860
 1861 YTRVNSQGGS LYSGPGPEYD DPANCAPEED QYGSQYGGPY GQPYDHYGSR GSMGRRSIGS1920
 1921 ARNPGNGSPE PPPPPPRNHD MSNSSFNDSK ESNEISEAEC DRDHGPRGNY GAVKRSPQPK1980
 1981 DQRTTEEMRK LIERNETGPK QLQLQQANGA GFTAYDTMAV 

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