YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109895092
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	114	0.91
Transmembrane Helix	115	135	0.80
Non-Cytoplasmic	136	150	0.80
Transmembrane Helix	151	172	0.91
Cytoplasmic	173	179	0.92
Transmembrane Helix	180	201	0.91
Non-Cytoplasmic	202	207	0.82
Transmembrane Helix	208	230	0.91
Cytoplasmic	231	237	0.84
Transmembrane Helix	238	259	0.86
Non-Cytoplasmic	260	265	0.76
Transmembrane Helix	266	284	0.95
Cytoplasmic	285	292	0.77
Transmembrane Helix	293	314	0.89
Non-Cytoplasmic	315	328	0.86
Transmembrane Helix	329	351	0.82
Cytoplasmic	352	358	0.70
Transmembrane Helix	359	379	0.88
Non-Cytoplasmic	380	385	0.76
Transmembrane Helix	386	407	0.85
Cytoplasmic	408	425	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESLMVVPC SSYTPGRPPH PRLQQHHLLK SFPASSSSSS SSIQHNTNSN TLSVSSSAGQ  60
   61 GQCFLFKSYH PLPLRLPLQR RSTLSALDSD VPHPLHQGSV KSSSSKTSFE QWNSWTAKFS 120
  121 GASNIPFLLL QMPQIYLNAQ NLLAGNKAAL LAVPWMGMFT GLLGNLSLLS YFAKKRENEA 180
  181 IVVQTLGVIS LYVVFAQLSM ADAMPLPYFV ITSIVVATGL VLNFLNYFGW LNAGLWRFWE 240
  241 DFITVGGLSV LPQIMWSTFV PYLPNSILPG ALAFVVAVVA VVMARMGKLS EGGIKFVGAI 300
  301 SGWTATLLFM WMPVSQMWTN FLNPDNIKGL SASSMLLAMI GNGLMIPRAL FIRDLMWFTG 360
  361 STWASFFYGY GNIVCLYWFN SISKEFFLAA TTGLFLWIGM AVWRDAVVNE YDSPFTSLKE 420
  421 LVSGL