YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	QDR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.98
Transmembrane Helix	70	92	0.92
Non-Cytoplasmic	93	109	0.83
Transmembrane Helix	110	129	0.92
Cytoplasmic	130	136	0.84
Transmembrane Helix	137	159	0.89
Non-Cytoplasmic	160	165	0.63
Transmembrane Helix	166	184	0.91
Cytoplasmic	185	193	0.80
Transmembrane Helix	194	217	0.91
Non-Cytoplasmic	218	224	0.82
Transmembrane Helix	225	244	0.97
Cytoplasmic	245	341	0.85
Transmembrane Helix	342	364	0.84
Non-Cytoplasmic	365	418	0.60
Transmembrane Helix	419	440	0.91
Cytoplasmic	441	447	0.50
Transmembrane Helix	448	472	0.86
Non-Cytoplasmic	473	478	0.55
Transmembrane Helix	479	502	0.83
Cytoplasmic	503	509	0.55
Transmembrane Helix	510	532	0.91
Non-Cytoplasmic	533	563	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQQTSVMR NASIAKEERE GSDNNNVDRS SSDAISDNDA ERSNSHSEID NESNFDMVPY  60
   61 SRFSHKQKML LVVQCAFTGF FSTVAGSIYY PVLTIIERKF NITEELANVT IVVYFIFQGV 120
  121 APSIMGGLAD TFGRRPIVLW AILAYFCACI GLACAHNYAQ ILALRCLQAA GISPVIAINS 180
  181 GIMGDVTTKV ERGGYVGLVA GFQVVGTAFG ALIGAGLSSK WGWRAIFWFL AIGSGICLVF 240
  241 STLLMPETKR TLVGNGSVTP RSFLNRSLIL HVGSVKKTLH LDDPDPETLE PRTSVDFLAP 300
  301 LKILHIREID ILLSIAGLQF STWTTHQTAL TIVLSKKYNL SVAKIGLCFL PAGISTLTSI 360
  361 ISAGRYLNWS YRTRKVKYNR WIKEQELQLM EKYKGDKNKV AELIHSNSHY AFNLVEARLH 420
  421 PAFVTLLLSS IGFTAFGWCI SVKTPLAAVL CTSAFASLFS NCILTFSTTL IVDLFPSKAS 480
  481 TATGCLNLFR CLLSAIFIAA LTKMVEKMRY GGVFTFLSAI TSSSSLLLFY LLKNGKQLSF 540
  541 DRIRANDKSA GRSVGKNSEK VST