YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ICE2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLSKSFMQ SGRICAACFY LLFTLLSIPI SFKVGGLECG LSFTVTLFTL YFITTTLNVL  60
   61 ARRHGGRLYI FFTNCLYYSQ HFIIASLLYL FLSGFSNDEL GNVLKNKYNE SESFLEALKN 120
  121 SLNSNQINYV LYYYYYRFVV QPWQFVLTKS TPFFTLSEGF FTILAIQAVG ETNRWLSNDL 180
  181 NSNTWIISSL LTSGGVITAS LYYLYRIYVT PIWPLSIQTA SLLGLVLSMV CGLGLYGIVS 240
  241 QKGSVIESSL FFAYIVRCIY EISPKLATTA TDEILNLFKD VWQKHQRNLP TADNLLCYFH 300
  301 NVILKNAEVL WGSFIPRGRK KTGDFHDKLI SILSFEKVSL ISKPFWKFFK NFTFSVPLSI 360
  361 NEFCQVTIKM ASESVSPAIV INLCFRVLMF YSATRIIPAL QRKNDKQLRK SRRIMKGLYW 420
  421 YSPCILIAMY THLILQYSGE LKKDLCIWGC SEKWFGVDQP EIIVDSWGFW NWCNIFCTIL 480
  481 VYATELIGSG S

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	32	0.91
Non-Cytoplasmic	33	39	0.76
Transmembrane Helix	40	61	0.91
Cytoplasmic	62	69	0.87
Transmembrane Helix	70	92	0.87
Non-Cytoplasmic	93	150	0.91
Transmembrane Helix	151	170	0.80
Cytoplasmic	171	183	0.77
Transmembrane Helix	184	205	0.93
Non-Cytoplasmic	206	216	0.75
Transmembrane Helix	217	239	0.91
Cytoplasmic	240	416	0.79
Transmembrane Helix	417	435	0.94
Non-Cytoplasmic	436	467	0.91
Transmembrane Helix	468	488	0.77
Cytoplasmic	489	491	0.75