YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AVT7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.70
Transmembrane Helix	12	30	0.77
Non-Cytoplasmic	31	34	0.88
Transmembrane Helix	35	57	0.91
Cytoplasmic	58	76	0.80
Transmembrane Helix	77	99	0.80
Non-Cytoplasmic	100	117	0.76
Transmembrane Helix	118	134	0.94
Cytoplasmic	135	143	0.78
Transmembrane Helix	144	164	0.94
Non-Cytoplasmic	165	189	0.93
Transmembrane Helix	190	210	0.92
Cytoplasmic	211	223	0.90
Transmembrane Helix	224	246	0.90
Non-Cytoplasmic	247	264	0.90
Transmembrane Helix	265	286	0.92
Cytoplasmic	287	392	0.98
Transmembrane Helix	393	416	0.87
Non-Cytoplasmic	417	420	0.69
Transmembrane Helix	421	443	0.85
Cytoplasmic	444	462	0.86
Transmembrane Helix	463	484	0.92
Non-Cytoplasmic	485	490	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATSSALSS TANLVKTIVG AGTLAIPYSF KSDGVLVGVI LTLLAAVTSG LGLFVLSKCS  60
   61 KTLINPRNSS FFTLCMLTYP TLAPIFDLAM IVQCFGVGLS YLVLIGDLFP GLFGGERNYW 120
  121 IIASAVIIIP LCLVKKLDQL KYSSILGLFA LAYISILVFS HFVFELGKGE LTNILRNDIC 180
  181 WWKIHDFKGL LSTFSIIIFA FTGSMNLFPM INELKDNSME NITFVINNSI SLSTALFLIV 240
  241 GLSGYLTFGN ETLGNLMLNY DPNSIWIVIG KFCLGSMLIL SFPLLFHPLR IAVNNVIIWI 300
  301 EITYGGANPE EDPQVSEYTR ASNLRPISMT VEDPAQPSDA LDATSYNEQE CLLPNGNFDN 360
  361 GSIESQENNN DERGTMAVAG DNEHHAPFVK SRFYWITALL LISMYTLALS VQSFALVLSF 420
  421 VGATGSTSIS FTLPGLLGYK LIGLDSLAIG KMIPPKDRFY KRCSLLLVFY GLSVMFLSLY 480
  481 VTVFNRSDEA