YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHS7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSDFAAIC SKTPLPLCSV IKSKTHLILS NSTIIHDFDP LNLNVGVLPR CYARSIDLAN  60
   61 TVIFDVGNAF INIGALGVIL IILYNIRQKY TAIGRSEYLY FFQLTLLLII FTLVVDCGVS 120
  121 PPGSGSYPYF VAIQIGLAGA CCWALLIIGF LGFNLWEDGT TKSMLLVRGT SMLGFIANFL 180
  181 ASILTFKAWI TDHKVATMNA SGMIVVVYII NAIFLFVFVI CQLLVSLLVV RNLWVTGAIF 240
  241 LGLFFFVAGQ VLVYAFSTQI CEGFKHYLDG LFFGSICNVF TLMMVYKTWD MTTDDDLEFG 300
  301 VSVSKDGDVV YDNGFM

Type	Start	End	Confidence
Non-Cytoplasmic	1	65	0.84
Transmembrane Helix	66	86	0.89
Cytoplasmic	87	97	0.86
Transmembrane Helix	98	119	0.90
Non-Cytoplasmic	120	130	0.77
Transmembrane Helix	131	155	0.89
Cytoplasmic	156	164	0.86
Transmembrane Helix	165	186	0.89
Non-Cytoplasmic	187	203	0.72
Transmembrane Helix	204	225	0.91
Cytoplasmic	226	232	0.70
Transmembrane Helix	233	256	0.88
Non-Cytoplasmic	257	265	0.80
Transmembrane Helix	266	286	0.81
Cytoplasmic	287	316	0.83