YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.99
Transmembrane Helix	83	102	0.96
Non-Cytoplasmic	103	135	0.94
Transmembrane Helix	136	155	0.94
Cytoplasmic	156	164	0.81
Transmembrane Helix	165	185	0.94
Non-Cytoplasmic	186	191	0.90
Transmembrane Helix	192	213	0.94
Cytoplasmic	214	224	0.80
Transmembrane Helix	225	245	0.89
Non-Cytoplasmic	246	255	0.86
Transmembrane Helix	256	277	0.89
Cytoplasmic	278	346	0.95
Transmembrane Helix	347	367	0.67
Non-Cytoplasmic	368	380	0.71
Transmembrane Helix	381	402	0.85
Cytoplasmic	403	409	0.92
Transmembrane Helix	410	429	0.96
Non-Cytoplasmic	430	449	0.84
Transmembrane Helix	450	473	0.90
Cytoplasmic	474	484	0.91
Transmembrane Helix	485	507	0.86
Non-Cytoplasmic	508	512	0.79
Transmembrane Helix	513	533	0.92
Cytoplasmic	534	592	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELENAHQG PLEGSATVST NSNSYNEKSG NSTAPGTAGY NDNLAQAKPV SSYISHEGPP  60
   61 KDELEELQKE VDKQLEKKSK SDLLFVSVCC LMVAFGGFVF GWDTGTISGF VRQTDFIRRF 120
  121 GSTRANGTTY LSDVRTGLMV SIFNIGCAIG GIVLSKLGDM YGRKIGLMTV VVIYSIGIII 180
  181 QIASIDKWYQ YFIGRIISGL GVGGITVLAP MLISEVSPKQ LRGTLVSCYQ LMITFGIFLG 240
  241 YCTNFGTKNY SNSVQWRVPL GLCFAWSIFM IVGMTFVPES PRYLVEVGKI EEAKRSLARA 300
  301 NKTTEDSPLV TLEMENYQSS IEAERLAGSA SWGELVTGKP QMFRRTLMGM MIQSLQQLTG 360
  361 DNYFFYYGTT IFQAVGLEDS FETAIVLGVV NFVSTFFSLY TVDRFGRRNC LLWGCVGMIC 420
  421 CYVVYASVGV TRLWPNGQDQ PSSKGAGNCM IVFACFYIFC FATTWAPVAY VLISESYPLR 480
  481 VRGKAMSIAS ACNWIWGFLI SFFTPFITSA INFYYGYVFM GCMVFAYFYV FFFVPETKGL 540
  541 TLEEVNEMYE ENVLPWKSTK WIPPSRRTTD YDLDATRNDP RPFYKRMFTK EK